View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_19 (Length: 255)
Name: NF3309_low_19
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 45076560 - 45076798
Alignment:
| Q |
17 |
atgaacaatacataaaaactatgcacagagaaaattacagtacataggaattttcgaatactggactcttcatcatgtttttatgagacatggcgattgt |
116 |
Q |
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| T |
45076560 |
atgaacaatacataaaaactatgcacagagaaaattacagtacataggaattttcgaatactggactcttcatcatgtttttatgagacatggcaattgt |
45076659 |
T |
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| Q |
117 |
tgtagagaaaccacaagcatatggtcttatatatagagagaggattatatgactacaaaatgcatatcaaaatcaaatcaaaagttattattatttggct |
216 |
Q |
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| T |
45076660 |
tgtagagaaaccacaagcatatggtcttatatatagagagaggattatatgactacaaaatgcatatcaaaatcaaatcaaaagttattattatttggct |
45076759 |
T |
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| Q |
217 |
atacaatttttcctatggttaatgttgattcattgtaaa |
255 |
Q |
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| T |
45076760 |
atacaatttttcctatggttaattttgattcattgtaaa |
45076798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 45079718 - 45079785
Alignment:
| Q |
17 |
atgaacaatacataaaaactatgcacagagaaaattacagtacataggaattttcgaatactggactcttcat |
89 |
Q |
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||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| || ||||||||| |
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| T |
45079718 |
atgaacaatacataaaaactatgcagaaagaaaat-----tacataggaattttcgaatcttgcactcttcat |
45079785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 34506369 - 34506436
Alignment:
| Q |
17 |
atgaacaatacataaaaactatgcacagagaaaattacagtacataggaattttcgaatactggactcttcat |
89 |
Q |
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| T |
34506369 |
atgaacaacacataaaaactatgcacaatgaaaattacaa-----aggaattttcgaatcttggactcttcat |
34506436 |
T |
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