View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3309_low_2 (Length: 854)

Name: NF3309_low_2
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3309_low_2
NF3309_low_2
[»] chr3 (28 HSPs)
chr3 (9-833)||(38626070-38626894)
chr3 (693-768)||(39657982-39658057)
chr3 (689-767)||(42644300-42644379)
chr3 (683-729)||(48089641-48089687)
chr3 (664-767)||(30958105-30958209)
chr3 (664-767)||(30973917-30974021)
chr3 (689-727)||(7012678-7012716)
chr3 (687-725)||(24916576-24916614)
chr3 (689-767)||(31766160-31766238)
chr3 (690-727)||(10852738-10852775)
chr3 (690-727)||(23918881-23918918)
chr3 (670-727)||(50664777-50664834)
chr3 (670-725)||(1441362-1441417)
chr3 (680-767)||(25181239-25181326)
chr3 (689-768)||(32112088-32112167)
chr3 (689-736)||(40415312-40415359)
chr3 (689-768)||(44225603-44225682)
chr3 (696-775)||(49158621-49158700)
chr3 (667-725)||(3776594-3776652)
chr3 (689-731)||(7899143-7899185)
chr3 (689-731)||(16246115-16246157)
chr3 (689-727)||(23496355-23496393)
chr3 (689-767)||(41115275-41115353)
chr3 (689-731)||(52931593-52931635)
chr3 (689-726)||(31084245-31084282)
chr3 (674-727)||(34561131-34561184)
chr3 (672-725)||(41591308-41591361)
chr3 (681-726)||(49526695-49526740)
[»] chr8 (21 HSPs)
chr8 (190-421)||(34622376-34622607)
chr8 (664-730)||(2764419-2764485)
chr8 (670-725)||(15206723-15206778)
chr8 (689-727)||(19649232-19649270)
chr8 (672-767)||(32994153-32994250)
chr8 (664-725)||(16972019-16972080)
chr8 (681-725)||(32767475-32767519)
chr8 (692-727)||(10552934-10552969)
chr8 (664-767)||(18123295-18123398)
chr8 (689-768)||(29970848-29970927)
chr8 (664-767)||(32927961-32928064)
chr8 (664-711)||(43492206-43492253)
chr8 (689-727)||(22936818-22936856)
chr8 (689-727)||(31246340-31246378)
chr8 (680-726)||(33588757-33588803)
chr8 (690-768)||(38715193-38715271)
chr8 (689-727)||(43550937-43550975)
chr8 (664-725)||(36447703-36447764)
chr8 (689-726)||(36779437-36779474)
chr8 (689-754)||(38516344-38516409)
chr8 (683-724)||(38875211-38875252)
[»] chr7 (18 HSPs)
chr7 (667-767)||(40491650-40491750)
chr7 (681-766)||(15311189-15311274)
chr7 (664-729)||(40561709-40561774)
chr7 (691-731)||(26975305-26975345)
chr7 (665-725)||(45557435-45557495)
chr7 (670-724)||(18350120-18350174)
chr7 (693-767)||(42481803-42481877)
chr7 (681-725)||(29829324-29829368)
chr7 (683-727)||(38230121-38230165)
chr7 (689-727)||(42752203-42752241)
chr7 (689-727)||(48459769-48459807)
chr7 (689-726)||(4228606-4228643)
chr7 (690-727)||(10371970-10372007)
chr7 (664-725)||(12306792-12306853)
chr7 (690-727)||(20088929-20088966)
chr7 (663-724)||(22310415-22310476)
chr7 (664-725)||(27571931-27571992)
chr7 (578-646)||(45369107-45369176)
[»] chr2 (17 HSPs)
chr2 (664-724)||(15220817-15220877)
chr2 (681-726)||(3853939-3853984)
chr2 (664-725)||(16518847-16518908)
chr2 (689-768)||(12110921-12111000)
chr2 (689-731)||(11005710-11005752)
chr2 (689-727)||(23359953-23359991)
chr2 (698-754)||(3716571-3716627)
chr2 (689-725)||(10918650-10918686)
chr2 (664-731)||(32307153-32307220)
chr2 (697-768)||(40704682-40704753)
chr2 (689-727)||(1945062-1945100)
chr2 (689-727)||(23377551-23377589)
chr2 (689-731)||(31224727-31224769)
chr2 (691-768)||(10618862-10618939)
chr2 (690-727)||(30007576-30007613)
chr2 (689-726)||(34433330-34433367)
chr2 (689-726)||(42089552-42089589)
[»] chr4 (21 HSPs)
chr4 (664-731)||(22683933-22684000)
chr4 (680-768)||(39000531-39000619)
chr4 (689-767)||(38740287-38740365)
chr4 (670-768)||(43868211-43868309)
chr4 (664-725)||(33843780-33843841)
chr4 (689-726)||(36150627-36150664)
chr4 (691-768)||(48575480-48575557)
chr4 (683-724)||(54487248-54487289)
chr4 (665-725)||(25927376-25927436)
chr4 (584-646)||(2171738-2171801)
chr4 (664-723)||(17898085-17898144)
chr4 (664-731)||(25319117-25319184)
chr4 (692-731)||(46382869-46382908)
chr4 (689-727)||(16566328-16566366)
chr4 (689-727)||(22699765-22699803)
chr4 (689-727)||(22980727-22980765)
chr4 (689-727)||(22994314-22994352)
chr4 (689-731)||(41866177-41866219)
chr4 (689-731)||(52062999-52063041)
chr4 (689-726)||(14597650-14597687)
chr4 (690-727)||(28947774-28947811)
[»] chr6 (14 HSPs)
chr6 (667-729)||(882758-882820)
chr6 (668-774)||(1499973-1500079)
chr6 (692-731)||(25208723-25208762)
chr6 (659-768)||(3524989-3525098)
chr6 (663-767)||(8856375-8856479)
chr6 (710-762)||(9043722-9043774)
chr6 (691-731)||(20846423-20846463)
chr6 (663-719)||(34620954-34621010)
chr6 (663-719)||(34748391-34748447)
chr6 (663-725)||(434192-434254)
chr6 (689-731)||(16442371-16442413)
chr6 (689-727)||(16548177-16548215)
chr6 (689-726)||(7486524-7486561)
chr6 (670-726)||(8551118-8551175)
[»] chr1 (25 HSPs)
chr1 (689-727)||(29759713-29759751)
chr1 (702-756)||(47307505-47307559)
chr1 (690-767)||(13344836-13344913)
chr1 (664-725)||(34915135-34915196)
chr1 (664-725)||(35961437-35961498)
chr1 (689-753)||(4347036-4347100)
chr1 (670-726)||(7301834-7301890)
chr1 (691-731)||(7335901-7335941)
chr1 (664-775)||(12655314-12655424)
chr1 (663-725)||(5268287-5268349)
chr1 (670-727)||(44786871-44786928)
chr1 (689-765)||(3887364-3887439)
chr1 (691-731)||(32365143-32365183)
chr1 (664-715)||(213246-213297)
chr1 (688-767)||(40642990-40643069)
chr1 (664-719)||(48548975-48549030)
chr1 (689-727)||(1199889-1199927)
chr1 (689-727)||(20800303-20800341)
chr1 (681-727)||(33693088-33693134)
chr1 (689-727)||(35569228-35569266)
chr1 (689-727)||(40352453-40352491)
chr1 (689-727)||(48510970-48511008)
chr1 (691-725)||(50751256-50751290)
chr1 (664-725)||(7524182-7524243)
chr1 (693-770)||(26253024-26253101)
[»] scaffold0172 (1 HSPs)
scaffold0172 (689-768)||(15241-15320)
[»] chr5 (19 HSPs)
chr5 (681-764)||(29922986-29923069)
chr5 (689-731)||(2483732-2483774)
chr5 (689-731)||(2868371-2868413)
chr5 (681-719)||(4306598-4306636)
chr5 (689-727)||(22811078-22811116)
chr5 (691-724)||(24036627-24036660)
chr5 (692-752)||(5465398-5465458)
chr5 (692-752)||(6988217-6988277)
chr5 (583-646)||(10898672-10898736)
chr5 (667-731)||(10957205-10957268)
chr5 (664-731)||(28304821-28304888)
chr5 (689-727)||(19784865-19784903)
chr5 (689-727)||(22482241-22482279)
chr5 (693-727)||(35816985-35817019)
chr5 (574-643)||(38045390-38045460)
chr5 (663-752)||(10273268-10273357)
chr5 (582-646)||(29922575-29922640)
chr5 (685-726)||(40885259-40885300)
chr5 (689-726)||(43152386-43152423)
[»] scaffold0393 (1 HSPs)
scaffold0393 (581-646)||(12378-12444)
[»] scaffold0361 (1 HSPs)
scaffold0361 (663-719)||(14075-14131)
[»] scaffold0031 (1 HSPs)
scaffold0031 (690-731)||(99701-99742)
[»] scaffold0009 (1 HSPs)
scaffold0009 (690-727)||(199394-199431)
[»] scaffold0005 (1 HSPs)
scaffold0005 (689-726)||(219691-219728)


Alignment Details
Target: chr3 (Bit Score: 776; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 9 - 833
Target Start/End: Original strand, 38626070 - 38626894
Alignment:
Q  9 acatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacacaccccaaaaatcaagttgcctgtaagtataag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626070 acatcatcaaaaccagctaatatctttgtgaatttagcacgaacaatgcctttctgcaaacatgacacaccccaaaaatcaagttgcctgtaagtataag 38626169  T
Q  109 gaggtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccccctctgnnnnnnngcagtgtggtgcgagactc 208  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  38626170 gaagtcagcattattccttcaattaaatctcatcaacataaatacatacatccttacggtgtgtcccccctctgaaaaaaagcagtgtggtgcgagactc 38626269  T
Q  209 aaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattagatacacctttggggtaacgg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626270 aaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattagatacacctttggggtaacgg 38626369  T
Q  309 ccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaatatgtggtctctacctccag 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626370 ccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaatatgtggtctctacctccag 38626469  T
Q  409 acctttgccaatactttgattgccttaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtacacgaaagaaacaac 508  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626470 acctttgccaatactttgattgccctaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtacacgaaagaaacaac 38626569  T
Q  509 ataagattaaaaaattaaagacacacagaaaattatgtgtgtgtttcgtctcaattttggatggagcaaattttattttgacatgtttggatgtttccag 608  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626570 ataagattaaaaaattaaagacacacagaaaattatgtgtgcgtttcgtctcaattttggatggagcaaattttattttgacatgtttggatgtttccag 38626669  T
Q  609 taaaattgattttgcctcgggaattgattataacttgagacttgaatttgtatctttcaactcacttctacgtgaatgtgtccaaacataaatcatttta 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  38626670 taaaattgattttgcctcgggaattgattataacttgagacttgaatttgtatctttcaactcacttccacgtgaatatgtccaaacataaatcatttca 38626769  T
Q  709 cattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcacattcagttagagacaaatacacaagcaacttct 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626770 cattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcacattcagttagagacaaatacacaagcaacttct 38626869  T
Q  809 atgcaatactgctgttggaacttgc 833  Q
    |||||||||| ||||||||||||||    
T  38626870 atgcaatactactgttggaacttgc 38626894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 693 - 768
Target Start/End: Complemental strand, 39658057 - 39657982
Alignment:
Q  693 aacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||| ||||||||||||||  |||||||| |||| || | ||||||||||||||| ||| |||||||||||    
T  39658057 aacataaattattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaattt 39657982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 767
Target Start/End: Original strand, 42644300 - 42644379
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcga-ctttacataatcaattcattaaaaatcaatt 767  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |  |||| | |||||||||| | ||||||||||    
T  42644300 tccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaatt 42644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 683 - 729
Target Start/End: Complemental strand, 48089687 - 48089641
Alignment:
Q  683 aatgtgtccaaacataaatcattttacattcaactcacttttaacta 729  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  48089687 aatgtatccaatcataaatcattttacattcaactcacttttaacta 48089641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 767
Target Start/End: Original strand, 30958105 - 30958209
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcat-tttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 762  Q
    ||||| |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| |||||    
T  30958105 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30958204  T
Q  763 caatt 767  Q
    |||||    
T  30958205 caatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 767
Target Start/End: Original strand, 30973917 - 30974021
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcat-tttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 762  Q
    ||||| |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| |||||    
T  30973917 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30974016  T
Q  763 caatt 767  Q
    |||||    
T  30974017 caatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 7012678 - 7012716
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7012678 tccaaacataaatcactttacattcaactcacttttaac 7012716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 725
Target Start/End: Original strand, 24916576 - 24916614
Alignment:
Q  687 tgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  24916576 tgtctaaacataaatcattttacattcaactcactttta 24916614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 31766238 - 31766160
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    ||||||||||||||| ||||  ||||||||||||||| | ||| |  | |||||| |||||||||||| ||||||||||    
T  31766238 tccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 10852775 - 10852738
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaac 10852738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 727
Target Start/End: Original strand, 23918881 - 23918918
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| |||||||||||||||||||||||    
T  23918881 ccaaacataaatcactttacattcaactcacttttaac 23918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Original strand, 50664777 - 50664834
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||| |||  ||| ||||||||||||||| || ||||||||||||||||||||    
T  50664777 tcacttctaagtgtgtgtatccaaacataaatcaattcacattcaactcacttttaac 50664834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 725
Target Start/End: Complemental strand, 1441417 - 1441362
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||| ||||||||||| || ||||| |||||| ||||| |||||||||||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcactttta 1441362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 767
Target Start/End: Original strand, 25181239 - 25181326
Alignment:
Q  680 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    ||||| || ||||||||||||| |||||||||| |||||||||||||  ||| || | | |||| |||||||||| | || |||||||    
T  25181239 gtgaaggtatccaaacataaataattttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaatt 25181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 32112088 - 32112167
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||||||| | ||| ||||||||||| ||||| | | | || | ||||||||||||||||| | |||||||||||    
T  32112088 tccaaacataaattacttttcattcaactcatttttatccataatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 736
Target Start/End: Complemental strand, 40415359 - 40415312
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcga 736  Q
    ||||||||||||| | ||||||| ||||||||||||||||||| ||||    
T  40415359 tccaaacataaattaatttacatccaactcacttttaactaaaatcga 40415312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 44225603 - 44225682
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||||||||| |||||||| |||||||||||||| ||| || | | |||| ||||||||   | |||||||||||    
T  44225603 tccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattt 44225682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 775
Target Start/End: Original strand, 49158621 - 49158700
Alignment:
Q  696 ataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcac 775  Q
    ||||||||| ||| |||| | ||||||||| || || || | |||||| |||||||||||| ||||||||||||| ||||    
T  49158621 ataaatcatcttatattctagtcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaatttatatcac 49158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 667 - 725
Target Start/End: Original strand, 3776594 - 3776652
Alignment:
Q  667 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||| ||| | ||||| ||||| ||||||||| ||||||||||||||| |||||    
T  3776594 aactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaatttta 3776652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 7899185 - 7899143
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  7899185 tccaaacataaatcgttttacattcaactatcttttaactaaa 7899143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 16246157 - 16246115
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  16246157 tccaaacataaatcaatttacatctaactcacttttaactaaa 16246115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 23496355 - 23496393
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  23496355 tccaaacataaatcaattcacattcaactcacttttaac 23496393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 41115353 - 41115275
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    |||||||||||| |||||||||||||||||| | ||| | ||| || | | |||| |||||||||||| | ||||||||    
T  41115353 tccaaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 52931635 - 52931593
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||| |||||| | ||||||||||||||||||    
T  52931635 tccaaacataaatcaatttacactaaactcacttttaactaaa 52931593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 31084245 - 31084282
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| || |||||||||||||||||||    
T  31084245 tccaaacataaatcaattcacattcaactcacttttaa 31084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 727
Target Start/End: Original strand, 34561131 - 34561184
Alignment:
Q  674 ttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||| || ||||| ||||||||||||||| ||  |||||||||||||||||||    
T  34561131 ttctaagtcaatgtatccaaacataaatcaattcgcattcaactcacttttaac 34561184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 725
Target Start/End: Complemental strand, 41591361 - 41591308
Alignment:
Q  672 acttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||| ||| ||||||| ||||||||||||||| |||| |||||||||| |||||    
T  41591361 acttttacatgaatgtatccaaacataaatcactttaaattcaactcattttta 41591308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 726
Target Start/End: Complemental strand, 49526740 - 49526695
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||| ||||||||||||||| |||||| |||| ||||||||||    
T  49526740 tgaatgtatccaaacataaatcaatttacaatcaattcacttttaa 49526695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 190 - 421
Target Start/End: Complemental strand, 34622607 - 34622376
Alignment:
Q  190 gcagtgtggtgcgagactcaaacggatcatgaggctcatcatctacataagaatctacgaaatgtacatatggggacactacatccttgttcaaattaga 289  Q
    ||||||||| ||||  |||  ||||||| ||||| |||||||||  ||||||||| || | ||| ||||| |||||||| ||||| || |||||||||||    
T  34622607 gcagtgtggagcgaatctcgtacggatcttgaggttcatcatctgtataagaatccacaacatgaacatacggggacaccacatctttattcaaattaga 34622508  T
Q  290 tacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacctaaatgcattgggatgtgtcataggaaat 389  Q
     |  || || ||||| ||||||||||| |||||||| |||||||  || ||||  ||||  || | ||| ||||| |||||||| |||||||||||||||    
T  34622507 catgcccttagggtagcggccaaaatccacaacaacttgaatagtatcattcaattgattacgtaggaatctaaaggcattggggtgtgtcataggaaat 34622408  T
Q  390 atgtggtctctacctccagacctttgccaata 421  Q
    |  |||||||| |||  |||||| ||||||||    
T  34622407 acatggtctctgcctttagacctctgccaata 34622376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 2764485 - 2764419
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaa 730  Q
    |||||||||||| ||||||||||| |||||| |||||||| |||| |||||||| ||||||||||||    
T  2764485 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatattcaacttacttttaactaa 2764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 670 - 725
Target Start/End: Original strand, 15206723 - 15206778
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||| || ||||| ||||||||||||||| || ||||||||||||||||||    
T  15206723 tcacttctaagtcaatgtatccaaacataaatcaattcacattcaactcactttta 15206778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 19649232 - 19649270
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  19649232 tccaaacataaatcactttacattcaactcacttttaac 19649270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 672 - 767
Target Start/End: Complemental strand, 32994250 - 32994153
Alignment:
Q  672 acttctacgtgaatgtgtccaaacataaatca--ttttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    |||| ||| |||||| ||||||||||||||||  |||||| ||||||||||||| | | | | || | |||||||||||| |||||| ||||||||||    
T  32994250 acttttacatgaatgagtccaaacataaatcaaattttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaatt 32994153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 725
Target Start/End: Complemental strand, 16972080 - 16972019
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||| |||||| ||| ||||||| | |||||| |||||||||||| |||||||||||||||    
T  16972080 ttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcactttta 16972019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 725
Target Start/End: Original strand, 32767475 - 32767519
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||    
T  32767475 tgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 727
Target Start/End: Complemental strand, 10552969 - 10552934
Alignment:
Q  692 aaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||| |||||||||||||||||||||||    
T  10552969 aaacataaatcaatttacattcaactcacttttaac 10552934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 767
Target Start/End: Original strand, 18123295 - 18123398
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatc 763  Q
    |||||||||||| ||| | ||| | | | |||| |||||||||||| ||||| |||||||||  || |||||| ||||||| ||||||||| |  |||||    
T  18123295 ttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcactctaaatc 18123394  T
Q  764 aatt 767  Q
    ||||    
T  18123395 aatt 18123398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 29970848 - 29970927
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||||||||| |||| | |||||||||||||||||||| || | | |||| | |||||||  | |||||||||||    
T  29970848 tccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattctatcaaaatcaattt 29970927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 767
Target Start/End: Original strand, 32927961 - 32928064
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatc 763  Q
    |||||||||||| ||| ||||||| |||||||| |||||| ||| | ||||||||| |||||   | | || | ||||||||||||||||  | ||||||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatc 32928060  T
Q  764 aatt 767  Q
    ||||    
T  32928061 aatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 711
Target Start/End: Complemental strand, 43492253 - 43492206
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacat 711  Q
    ||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaatcattttacat 43492206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 22936856 - 22936818
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  22936856 tccaaacataaatcaattcacattcaactcacttttaac 22936818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 31246378 - 31246340
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  31246378 tccaaacataaatcaattcacattcaactcacttttaac 31246340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 726
Target Start/End: Original strand, 33588757 - 33588803
Alignment:
Q  680 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||| || ||||||||||||| |||||||||| |||||||||||||    
T  33588757 gtgaaggtatccaaacataaataattttacattaaactcacttttaa 33588803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 690 - 768
Target Start/End: Complemental strand, 38715271 - 38715193
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    |||||||||||||| |||||| | |||||| ||||||||||| || | | | || |||||||||| | |||||||||||    
T  38715271 ccaaacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaattcaattaaaatcaattt 38715193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 43550937 - 43550975
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  43550937 tccaaacataaatcaattcacattcaactcacttttaac 43550975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 725
Target Start/End: Complemental strand, 36447764 - 36447703
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||| || ||| | ||||| || ||||| ||||||||||| ||||||||||||||||    
T  36447764 ttcaactcagttatacataaatgtatctaaacacaaatcattttatattcaactcactttta 36447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 36779437 - 36779474
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  36779437 tccaaacataaattactttacattcaactcacttttaa 36779474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 754
Target Start/End: Original strand, 38516344 - 38516409
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattca 754  Q
    ||||||||||||||| ||||||||||||||||| ||| | ||| || | | |||| ||||||||||    
T  38516344 tccaaacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaattca 38516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 38875252 - 38875211
Alignment:
Q  683 aatgtgtccaaacataaatcattttacattcaactcactttt 724  Q
    ||||| ||||||||||||||| |||||||| |||||||||||    
T  38875252 aatgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 667 - 767
Target Start/End: Original strand, 40491650 - 40491750
Alignment:
Q  667 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaat 766  Q
    ||||||||| ||| ||||||| |||||| |||||||| ||||| |||||||||||||||   ||| || | |||||| |||||||||| | |||||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaat 40491749  T
Q  767 t 767  Q
    |    
T  40491750 t 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 766
Target Start/End: Complemental strand, 15311274 - 15311189
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaat 766  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||| | | || | |||||| ||||||||  || |||||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaattagttcaaaatcaat 15311189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 729
Target Start/End: Complemental strand, 40561774 - 40561709
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaacta 729  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||||| |||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttacta 40561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 731
Target Start/End: Complemental strand, 26975345 - 26975305
Alignment:
Q  691 caaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  26975345 caaacataaatcattttacattcaactcacttataactaaa 26975305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 725
Target Start/End: Original strand, 45557435 - 45557495
Alignment:
Q  665 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcactttta 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 724
Target Start/End: Complemental strand, 18350174 - 18350120
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 724  Q
    |||||| | ||||||||| |  |||||||||||||||||||||||||||||||||    
T  18350174 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 18350120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 767
Target Start/End: Complemental strand, 42481877 - 42481803
Alignment:
Q  693 aacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    ||||||||||||||||||||||||||||||||    | | || | ||||||||||||||||| | ||||||||||    
T  42481877 aacataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 725
Target Start/End: Complemental strand, 29829368 - 29829324
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaactcattttta 29829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 683 - 727
Target Start/End: Original strand, 38230121 - 38230165
Alignment:
Q  683 aatgtgtccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||    
T  38230121 aatgtatccaaacataaatcaattcacattcaactcacttttaac 38230165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 42752241 - 42752203
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  42752241 tccaaacataaatcaattcacattcaactcacttttaac 42752203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 48459769 - 48459807
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  48459769 tccaaacataaatcaattcacattcaactcacttttaac 48459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 4228606 - 4228643
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  4228606 tccaaacataaatcacttttcattcaactcacttttaa 4228643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 10372007 - 10371970
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| || ||||||||||||||||||||    
T  10372007 ccaaacataaatcaattcacattcaactcacttttaac 10371970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 12306792 - 12306853
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||| ||| ||||| |  |||||||||||||| ||||  |||||||||||||||    
T  12306792 ttcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcactttta 12306853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Original strand, 20088929 - 20088966
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaac 20088966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 724
Target Start/End: Complemental strand, 22310476 - 22310415
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 724  Q
    |||||| |||||| |||| |||||| |||||||||||||| |||||  ||||||||| ||||    
T  22310476 tttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttt 22310415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 27571931 - 27571992
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||||||| || ||||||||||||    
T  27571931 ttcaactcacatttacataaatgtatccaaccataaatcattttacctttaactcactttta 27571992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 646
Target Start/End: Original strand, 45369107 - 45369176
Alignment:
Q  578 attttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 646  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||||| ||  ||||||||| ||||||||    
T  45369107 atttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttga 45369176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 724
Target Start/End: Complemental strand, 15220877 - 15220817
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 724  Q
    ||||||||||||  || ||||||| ||||||||||||||| ||||||||||||||||||||    
T  15220877 ttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 726
Target Start/End: Original strand, 3853939 - 3853984
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  3853939 tgaatgtatccaaacataaatcaatttacattcaactcacttttaa 3853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 16518847 - 16518908
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||| ||| ||||||| |||||||| ||||||||||||  ||||||||||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcactttta 16518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 768
Target Start/End: Original strand, 12110921 - 12111000
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  12110921 tccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 12111000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 11005752 - 11005710
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  11005752 tccaaacataaatcattttacattcaagtcactattaactaaa 11005710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 23359991 - 23359953
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  23359991 tccaaacataaatcactttacattcaactcacttttaac 23359953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 754
Target Start/End: Complemental strand, 3716627 - 3716571
Alignment:
Q  698 aaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattca 754  Q
    |||||||||||| ||||||||| ||||||||||| |  |||||| ||||||||||||    
T  3716627 aaatcattttaccttcaactcatttttaactaaaataaactttagataatcaattca 3716571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 725
Target Start/End: Original strand, 10918650 - 10918686
Alignment:
Q  689 tccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10918650 tccaaacataaatcactttacattcaactcactttta 10918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 731
Target Start/End: Original strand, 32307153 - 32307220
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||||||| || |||||| | |||||| ||||  |||||||||||| ||||| |||||||||||    
T  32307153 ttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaa 32307220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 768
Target Start/End: Original strand, 40704682 - 40704753
Alignment:
Q  697 taaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||| ||||||||||| | | ||||||| ||| || | || |||||||||||||||| |||||||||||    
T  40704682 taaatcaatttacattcaaataaattttaaccaaaatcaatttcacataatcaattcattcaaaatcaattt 40704753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 1945100 - 1945062
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1945100 tccaaacataaatcaattcacattcaactcacttttaac 1945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 23377551 - 23377589
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  23377551 tccaaacataaatcaacttacattcaactcacttttaac 23377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Original strand, 31224727 - 31224769
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  31224727 tccaaacataaatcaattcacatccaactcacttttaactaaa 31224769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 768
Target Start/End: Complemental strand, 10618939 - 10618862
Alignment:
Q  691 caaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||| ||| ||||| ||||| ||| ||||| ||| | || | |||||| |||||||||| |||||||||||||    
T  10618939 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 10618862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 30007613 - 30007576
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| || ||||||||||||||||||||    
T  30007613 ccaaacataaatcaattcacattcaactcacttttaac 30007576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 34433367 - 34433330
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| || |||||||||||||||||||    
T  34433367 tccaaacataaatcaattcacattcaactcacttttaa 34433330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 42089589 - 42089552
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| || |||||||||||||||||||    
T  42089589 tccaaacataaatcaattcacattcaactcacttttaa 42089552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 731
Target Start/End: Original strand, 22683933 - 22684000
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||| ||| ||| | |||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  22683933 ttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagtaaa 22684000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 768
Target Start/End: Complemental strand, 39000619 - 39000531
Alignment:
Q  680 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||| || |||||||||||||||||||  ||| | |||||||||||||||| || | | |||| |||||||||| | |||||||||||    
T  39000619 gtgaaggtatccaaacataaatcattttttattaagctcacttttaactaaactcaattctacaaaatcaattcaatcaaaatcaattt 39000531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 767
Target Start/End: Complemental strand, 38740365 - 38740287
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    ||||||||||||||| || |  ||||||||||||||| | ||| || | |||||| |||||||||||| ||||||||||    
T  38740365 tccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 670 - 768
Target Start/End: Original strand, 43868211 - 43868309
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    |||||| ||| | ||||| |||||| | |||||| ||||| ||||||| ||||||||||| | |  | |||||| |||||||||||| |||||||||||    
T  43868211 tcacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaattt 43868309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 33843780 - 33843841
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||  ||| ||||| | ||||||||||||||| ||||||| |||||||||||||    
T  33843780 ttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcactttta 33843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 36150627 - 36150664
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36150627 tccaaacataaatcactttacattcaactcacttttaa 36150664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 768
Target Start/End: Original strand, 48575480 - 48575557
Alignment:
Q  691 caaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    |||| ||||| |||||||||||||||||| ||||| | ||| || | |||||| |||||||||||| ||||| |||||    
T  48575480 caaaaataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaattt 48575557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 724
Target Start/End: Complemental strand, 54487289 - 54487248
Alignment:
Q  683 aatgtgtccaaacataaatcattttacattcaactcactttt 724  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  54487289 aatgtatccaaacataaatcaatttacattcaactcactttt 54487248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 725
Target Start/End: Original strand, 25927376 - 25927436
Alignment:
Q  665 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||| |||||| ||||||||||| || ||| ||||| |||||||| |||||||||||||||    
T  25927376 tcaattcacttttacgtgaatgtatcgaaatataaaacattttactttcaactcactttta 25927436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 646
Target Start/End: Original strand, 2171738 - 2171801
Alignment:
Q  584 ttttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 646  Q
    |||||||||||||||||||| || ||||||||||| |||||| | ||||||||||  |||||||    
T  2171738 ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttga 2171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 723
Target Start/End: Complemental strand, 17898144 - 17898085
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttt 723  Q
    ||||| |||||| ||| | ||| | ||||||||||||||| |||||||||||||||||||    
T  17898144 ttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 731
Target Start/End: Original strand, 25319117 - 25319184
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||||||| ||||| ||||| || |||||||||  | ||||||||||||| |||||||| ||||    
T  25319117 ttcaactcacttttacgtaaatgtatcgaaacataaaaaactttacattcaacttacttttaagtaaa 25319184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 731
Target Start/End: Original strand, 46382869 - 46382908
Alignment:
Q  692 aaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  46382869 aaacataaatcattttacattcaacttacttttatctaaa 46382908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 16566328 - 16566366
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16566328 tccaaacataaatcaattcacattcaactcacttttaac 16566366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 22699765 - 22699803
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22699765 tccaaacataaatcactttacattcaacttacttttaac 22699803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 22980765 - 22980727
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22980765 tccaaacataaatcactttacattcaacttacttttaac 22980727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 22994352 - 22994314
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22994352 tccaaacataaatcactttacattcaacttacttttaac 22994314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Original strand, 41866177 - 41866219
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  41866177 tccaaacataaatcaattcacatccaactcacttttaactaaa 41866219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 52063041 - 52062999
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||| |||||||||||| || ||||||||||||||||||    
T  52063041 tccaaacagaaatcattttaccttaaactcacttttaactaaa 52062999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 14597687 - 14597650
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  14597687 tccaaacataaatcacttttcattcaactcacttttaa 14597650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 28947811 - 28947774
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  28947811 ccaaacataaatcactttacgttcaactcacttttaac 28947774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 667 - 729
Target Start/End: Original strand, 882758 - 882820
Alignment:
Q  667 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaacta 729  Q
    ||||||||| | | ||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  882758 aactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaacta 882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 668 - 774
Target Start/End: Original strand, 1499973 - 1500079
Alignment:
Q  668 actcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    |||||||| ||| | ||||| | ||||||||||||| |||||| ||||||| |||||| | ||| || | |||||| |||||||||| | ||||||||||    
T  1499973 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatt 1500072  T
Q  768 tatgtca 774  Q
    | |||||    
T  1500073 tttgtca 1500079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 692 - 731
Target Start/End: Original strand, 25208723 - 25208762
Alignment:
Q  692 aaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  25208723 aaacataaatcattttacattcaactcacttttaattaaa 25208762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 768
Target Start/End: Original strand, 3524989 - 3525098
Alignment:
Q  659 tatctttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaa 758  Q
    |||| ||||||| |||| ||| | ||||| | |||| ||||| || ||| ||||||||||||||||| | | | || | ||||||||||||||||||| |    
T  3524989 tatcgttcaactgacttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagccacaatcaattttacataatcaattcattca 3525088  T
Q  759 aaatcaattt 768  Q
    |||| |||||    
T  3525089 aaattaattt 3525098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 767
Target Start/End: Original strand, 8856375 - 8856479
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 762  Q
    |||||||||||||  || ||||||| |||||||| |||||||||||| ||||||  ||||||||  ||| || | || |||| |||||||  || |||||    
T  8856375 tttcaactcactttcacatgaatgtatccaaacacaaatcattttaccttcaaccaacttttaataaaattcaatttgacatgatcaattttttcaaaat 8856474  T
Q  763 caatt 767  Q
    |||||    
T  8856475 caatt 8856479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 710 - 762
Target Start/End: Complemental strand, 9043774 - 9043722
Alignment:
Q  710 attcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 762  Q
    |||||||||||||||||||||| || | | |||| ||||||||||||||||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaat 9043722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 731
Target Start/End: Original strand, 20846423 - 20846463
Alignment:
Q  691 caaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  20846423 caaacataaatcattttacattctactcatttttaactaaa 20846463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 719
Target Start/End: Original strand, 34620954 - 34621010
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 719  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||||| |||||||||    
T  34620954 tttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34621010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 719
Target Start/End: Original strand, 34748391 - 34748447
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 719  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||||| |||||||||    
T  34748391 tttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34748447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 663 - 725
Target Start/End: Complemental strand, 434254 - 434192
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||||||| |||  |||| | |||||||| |||||||||||| | |||||||||||||    
T  434254 tttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcactttta 434192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 16442413 - 16442371
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||| || ||||||||||||||| ||||||||    
T  16442413 tccaaacataaatcaattcacattcaactcacttgtaactaaa 16442371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 16548177 - 16548215
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16548177 tccaaacataaatcaattcacattcaactcacttttaac 16548215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 7486524 - 7486561
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||||||||| || |||||||||||||    
T  7486524 tccaaacataaatcattttaccttaaactcacttttaa 7486561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 670 - 726
Target Start/End: Complemental strand, 8551175 - 8551118
Alignment:
Q  670 tcacttcta-cgtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||| ||| || |||||||||||||||||| ||| || |||||||||||||||    
T  8551175 tcacttctatcgtaaaggtgtccaaacataaatcacttttcactcaactcacttttaa 8551118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 29759713 - 29759751
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29759713 tccaaacataaatcattttacattcaactcacttttaac 29759751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 756
Target Start/End: Original strand, 47307505 - 47307559
Alignment:
Q  702 cattttacattcaactcacttttaactaaagtcgactttacataatcaattcatt 756  Q
    ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||    
T  47307505 cattttacattcaactcacttttaactaaagtcaattttataaaatcaattcatt 47307559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 690 - 767
Target Start/End: Original strand, 13344836 - 13344913
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| || | | |||| |||||||||| | ||||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 34915135 - 34915196
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||| ||| ||||||| | ||||||||||||||||||| | |||||||||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcactttta 34915196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 35961437 - 35961498
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||| ||| ||||||| |  |||||||||||||||||| |||||||||||||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcactttta 35961498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 689 - 753
Target Start/End: Original strand, 4347036 - 4347100
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattc 753  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| || | | |||| |||||||||    
T  4347036 tccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 670 - 726
Target Start/End: Complemental strand, 7301890 - 7301834
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 726  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  7301890 tcacttttacgtgaatgttaccaaatataaatcattttacattcaaatcacttttaa 7301834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 731
Target Start/End: Complemental strand, 7335941 - 7335901
Alignment:
Q  691 caaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  7335941 caaacataaatcactttacattcaactcacttttaactaaa 7335901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 775
Target Start/End: Original strand, 12655314 - 12655424
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatc 763  Q
    |||||||||||| ||| ||||| | || ||||||| | |||| |||||||||||| ||||||| |||| || | || |||||||||||||||  ||||||    
T  12655314 ttcaactcactt-tacatgaatttatctaaacatagaccattctacattcaactcgcttttaagtaaaatcaatttcacataatcaattcatctaaaatc 12655412  T
Q  764 aatttatgtcac 775  Q
     |||| ||||||    
T  12655413 tatttttgtcac 12655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 663 - 725
Target Start/End: Original strand, 5268287 - 5268349
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    ||||||||||||| ||| ||||| | | |||||| |||||| |||||||||||||||||||||    
T  5268287 tttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcactttta 5268349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 727
Target Start/End: Complemental strand, 44786928 - 44786871
Alignment:
Q  670 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||| ||| ||||||| | | ||||||||||||||||||||||||||| |||||||    
T  44786928 tcacttttacatgaatgtattcgaacataaatcattttacattcaactcatttttaac 44786871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 765
Target Start/End: Complemental strand, 3887439 - 3887364
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaa 765  Q
    |||||||||||| ||||||||||| ||||||| |||| ||||| || | |||||| || ||||||||| ||||||||    
T  3887439 tccaaacataaaacattttacattgaactcacctttatctaaaatc-attttacaaaaccaattcattcaaaatcaa 3887364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 731
Target Start/End: Original strand, 32365143 - 32365183
Alignment:
Q  691 caaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  32365143 caaacataaatcaatttacattcaactcacttttgactaaa 32365183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 715
Target Start/End: Complemental strand, 213297 - 213246
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaa 715  Q
    |||||||||||| ||| || |||| ||||||||||||||| |||||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaatcactttacattcaa 213246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 767
Target Start/End: Original strand, 40642990 - 40643069
Alignment:
Q  688 gtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 767  Q
    |||||||||||||||| |||||||||||||  || ||| | ||| || | |||||| |||||||||| | ||||||||||    
T  40642990 gtccaaacataaatcactttacattcaacttgctcttatccaaaatcaattttacagaatcaattcactcaaaatcaatt 40643069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 719
Target Start/End: Complemental strand, 48549030 - 48548975
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 719  Q
    |||||||||||| ||| | ||||| || |||||||||||||||||| |||||||||    
T  48549030 ttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactca 48548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 1199889 - 1199927
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1199889 tccaaacataaatcaattcacattcaactcacttttaac 1199927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 20800341 - 20800303
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  20800341 tccaaacataaatcaattcacattcaactcacttttaac 20800303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 681 - 727
Target Start/End: Original strand, 33693088 - 33693134
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  33693088 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaac 33693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Complemental strand, 35569266 - 35569228
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  35569266 tccaaacataaatcaattcacattcaactcacttttaac 35569228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 40352453 - 40352491
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  40352453 tccaaacataaatcactttacattaaactcacttttaac 40352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 48510970 - 48511008
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  48510970 tccaaacataaatcaattcacattcaactcacttttaac 48511008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 725
Target Start/End: Complemental strand, 50751290 - 50751256
Alignment:
Q  691 caaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||||||||||||| ||||||||||||    
T  50751290 caaacataaatcattttacatttaactcactttta 50751256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 7524182 - 7524243
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 725  Q
    |||||||||||| ||| | |||||||||||||| |||||| ||||| || | ||||||||||    
T  7524182 ttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcactttta 7524243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 770
Target Start/End: Complemental strand, 26253101 - 26253024
Alignment:
Q  693 aacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttat 770  Q
    ||||||||| ||||||| ||||||||| ||||||    | |||| |||||| |||||||||||| |||| ||||||||    
T  26253101 aacataaatgattttactttcaactcatttttaaaccgaatcgattttacagaatcaattcattcaaaaccaatttat 26253024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 689 - 768
Target Start/End: Complemental strand, 15320 - 15241
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 768  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  15320 tccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 15241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 681 - 764
Target Start/End: Original strand, 29922986 - 29923069
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatca 764  Q
    ||||||| ||||||||||||| | || ||||||||||||||| ||   ||| || | ||||||||||||||||||| |||||||    
T  29922986 tgaatgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 2483774 - 2483732
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  2483774 tccaaacataaatcaattcacattcaactcacttttaactaaa 2483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 731
Target Start/End: Complemental strand, 2868413 - 2868371
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  2868413 tccaaacttaaatcactttacattcaactcacttttaactaaa 2868371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 719
Target Start/End: Original strand, 4306598 - 4306636
Alignment:
Q  681 tgaatgtgtccaaacataaatcattttacattcaactca 719  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4306598 tgaatgtatccaaacataaatcattttacattcaactca 4306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 22811078 - 22811116
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  22811078 tccaaacataaatcactttacattcaactcacttttaac 22811116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 724
Target Start/End: Original strand, 24036627 - 24036660
Alignment:
Q  691 caaacataaatcattttacattcaactcactttt 724  Q
    ||||||||||||||||||||||||||||||||||    
T  24036627 caaacataaatcattttacattcaactcactttt 24036660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 752
Target Start/End: Complemental strand, 5465458 - 5465398
Alignment:
Q  692 aaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 752  Q
    |||||||||||||||| ||||||| ||||||||| ||||| || | |||||| ||||||||    
T  5465458 aaacataaatcatttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 752
Target Start/End: Original strand, 6988217 - 6988277
Alignment:
Q  692 aaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 752  Q
    ||||||||||||||||| |||||||| |||||||| |||| || | |||||| ||||||||    
T  6988217 aaacataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaatcaatt 6988277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 583 - 646
Target Start/End: Original strand, 10898672 - 10898736
Alignment:
Q  583 attttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 646  Q
    |||||||||||||||| || | || ||||||||||||||||||||  ||||||||| ||||||||    
T  10898672 attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttga 10898736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 731
Target Start/End: Complemental strand, 10957268 - 10957205
Alignment:
Q  667 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    ||||||||| ||||| |||||  | ||||||||||||||| |||||||| |||||||||||||||    
T  10957268 aactcacttgtacgtaaatgtaacaaaacataaatcattt-acattcaagtcacttttaactaaa 10957205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 731
Target Start/End: Complemental strand, 28304888 - 28304821
Alignment:
Q  664 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||| ||||  ||||||||| | |||||| |||||||||||  ||||||||||| |||||||||||    
T  28304888 ttcaacccactgttacgtgaatatatccaaatataaatcatttcccattcaactcatttttaactaaa 28304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 19784865 - 19784903
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||| || |||||||||||||||||||||||    
T  19784865 tccaaacataaaccactttacattcaactcacttttaac 19784903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 689 - 727
Target Start/End: Original strand, 22482241 - 22482279
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  22482241 tccaaacataaatcaattcacattcaactcacttttaac 22482279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 693 - 727
Target Start/End: Complemental strand, 35817019 - 35816985
Alignment:
Q  693 aacataaatcattttacattcaactcacttttaac 727  Q
    ||||||||| |||||||||||||||||||||||||    
T  35817019 aacataaattattttacattcaactcacttttaac 35816985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 574 - 643
Target Start/End: Original strand, 38045390 - 38045460
Alignment:
Q  574 gcaaattttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataact 643  Q
    ||||| || ||||||||||||||| ||||| || |||| ||||||||||||||| || ||||||| |||||    
T  38045390 gcaaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctccggtattgattttaact 38045460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 752
Target Start/End: Complemental strand, 10273357 - 10273268
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 752  Q
    ||||||| ||||| ||||  ||||| | ||| |||||||||||||| ||||||||||||| ||| |||| |  | |||||| ||||||||    
T  10273357 tttcaacccacttgtacgaaaatgtattcaagcataaatcattttatattcaactcacttataagtaaaattaattttacaaaatcaatt 10273268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 646
Target Start/End: Original strand, 29922575 - 29922640
Alignment:
Q  582 tattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 646  Q
    ||||||||||||||||  |||| || |||| |||||||||||||||  ||||||||| ||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttga 29922640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 726
Target Start/End: Original strand, 40885259 - 40885300
Alignment:
Q  685 tgtgtccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||||||| || |||| ||||||||||||||    
T  40885259 tgtgtccaaacataaatcaattcacatccaactcacttttaa 40885300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Complemental strand, 43152423 - 43152386
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  43152423 tccaaacataaatcacttttcattcaactcacttttaa 43152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 581 - 646
Target Start/End: Complemental strand, 12444 - 12378
Alignment:
Q  581 ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 646  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||  ||| ||||| ||||||||    
T  12444 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 12378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 719
Target Start/End: Complemental strand, 14131 - 14075
Alignment:
Q  663 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 719  Q
    |||||||||||||  || ||||||| ||||||||||||||| ||||| |||||||||    
T  14131 tttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactca 14075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 731
Target Start/End: Original strand, 99701 - 99742
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaactaaa 731  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  99701 ccaaacataaattaatttacattcaactcacttttaattaaa 99742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Complemental strand, 199431 - 199394
Alignment:
Q  690 ccaaacataaatcattttacattcaactcacttttaac 727  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  199431 ccaaacataaatcactttacgttcaactcacttttaac 199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 726
Target Start/End: Original strand, 219691 - 219728
Alignment:
Q  689 tccaaacataaatcattttacattcaactcacttttaa 726  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  219691 tccaaacataaatcacttttcattcaactcacttttaa 219728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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