View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_21 (Length: 249)
Name: NF3309_low_21
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4926636 - 4926859
Alignment:
| Q |
1 |
gagtgactttttaaatcagttaaactgatttaaaaagtgatttgaccgatctnnnnnnntttcaaatgacaattaaatactgttttatgacgaacgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
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| T |
4926636 |
gagtgactttttaaatcagttaaactgatttaaaaagtgatttgaccgatctaaaaaaatttcgaatgacaattaaataccgttttatgacgaacgacac |
4926735 |
T |
|
| Q |
101 |
ttaattgtcgttcaacaaactgtaattgcatttttgagcaattatagggtgcctaaagagcaacctcccctgaagtattgctcagtattgtgtgcagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4926736 |
ttaattgtcgttcaacaaactgtaattgcatttttgagcaagtatagggtgcctaaagagcaacctcccctgaaatattgctcagtattgtgtgcagttt |
4926835 |
T |
|
| Q |
201 |
caaaatatttagaagtgcgaccaa |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
4926836 |
caaaatatttagaagtgcgaccaa |
4926859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 43638554 - 43638506
Alignment:
| Q |
112 |
tcaacaaactgtaattgcatttttgagcaattatagggtgcctaaagag |
160 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||| ||||||||||||||| |
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|
| T |
43638554 |
tcaaccaactgtagttgcattttttagcaattagagggtgcctaaagag |
43638506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 4926673 - 4926641
Alignment:
| Q |
6 |
actttttaaatcagttaaactgatttaaaaagt |
38 |
Q |
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|
| T |
4926673 |
actttttaaatcagtttaactgatttaaaaagt |
4926641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 29943197 - 29943230
Alignment:
| Q |
6 |
actttttaaatcagttaaactgatttaaaaagtg |
39 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
29943197 |
actttttaaatcagttaaactgatttaaaaagtg |
29943230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 26225908 - 26225871
Alignment:
| Q |
5 |
gactttttaaatcagttaaactgatttaaaaagtgatt |
42 |
Q |
| |
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|||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
26225908 |
gactttttaaattagttaaactgatttaaaaattgatt |
26225871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 29943229 - 29943196
Alignment:
| Q |
6 |
actttttaaatcagttaaactgatttaaaaagtg |
39 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
29943229 |
actttttaaatcagtttaactgatttaaaaagtg |
29943196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 24613748 - 24613790
Alignment:
| Q |
8 |
tttttaaatcagttaaactgatttaaaaagtgatttgaccgat |
50 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||| |||||| |
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|
| T |
24613748 |
tttttaaatcagttaaactgattttaaaagttatttaaccgat |
24613790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 23752172 - 23752134
Alignment:
| Q |
14 |
aatcagttaaactgatttaaaaagtgatttgaccgatct |
52 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
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|
| T |
23752172 |
aatcagttaaactgatttaaaaagtgattgaaccgatct |
23752134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 18713272 - 18713226
Alignment:
| Q |
6 |
actttttaaatcagttaaactgatttaaaaagtgatttgaccgatct |
52 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
18713272 |
actttttaaatcggttaaaccaatttaaaaagtgattggaccgatct |
18713226 |
T |
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