View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_22 (Length: 246)
Name: NF3309_low_22
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 33829228 - 33829443
Alignment:
| Q |
15 |
atgaactatattagcattcaaattttaatcgtgaaaaagctcgactcaaatactatgaaactcgaaaaatacatgttttaacatgttgaatatatgcttg |
114 |
Q |
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| T |
33829228 |
atgaactatattagcattcaaattttaatcgtgaaaaagctcgactcaaatactatgaaactcgaaaaatacatgttttaacttgttgaatatatgcttg |
33829327 |
T |
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| Q |
115 |
agatgagtataatcatacgacggtccaatatcaaaagattttttagacctgcataaattatgcagtttgattttccaactaattgaactaattaaaaata |
214 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33829328 |
agatgagcataatcttacgacggtccaatatcaaaagattttttagggctgcataaattatgcagtttgattttccaactaattgaactaattaaacata |
33829427 |
T |
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| Q |
215 |
tactactccaatcttg |
230 |
Q |
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||||||||| |||||| |
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| T |
33829428 |
tactactccgatcttg |
33829443 |
T |
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