View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_25 (Length: 242)
Name: NF3309_low_25
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34691858 - 34691620
Alignment:
| Q |
1 |
tcgtggacgcaatcataacacaaattaattaaatagggcaataggcaaattgtattgaatatcattttggtaaatatctaagatcaacacttaacccaaa |
100 |
Q |
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| T |
34691858 |
tcgtggacgcaatcataacacaaattaattaaatagggcaataggcaaattgtattgaatgtcattttggtagatatctaagatcaacacttaacccaaa |
34691759 |
T |
|
| Q |
101 |
agcgtaaatgacgcagatcatttttaacttaattaagatgttgacttcaaattc-aaccttggccacgcaacatcgtaaaaacttttaagaaaagtttgt |
199 |
Q |
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| T |
34691758 |
agcgtaaatgacgcggatcatttctaacttaattaatatgttgagtttgaattcaaaccttggccacgcaacatcgtgaaaactcttaagaaaagtttgt |
34691659 |
T |
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| Q |
200 |
cttttatttggatcttacaaaacttcagaaattagtctc |
238 |
Q |
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| T |
34691658 |
cttttatttggatcctacaaaatttcagagattagtctc |
34691620 |
T |
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