View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_27 (Length: 240)
Name: NF3309_low_27
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34691964 - 34692184
Alignment:
| Q |
1 |
tccgtacgctgattgatttcattaagaaattttaaaaaagattaaactaaccaagtgaagcaacaaagatcacttcatttttaaaccacttcacggtgca |
100 |
Q |
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| T |
34691964 |
tccgtacgctgattgatt-cattaagaaatttaaaaaaagattaaactaaccaagtgaagcaacaaagatcacttcatttttaaaccacttcacggtgca |
34692062 |
T |
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| Q |
101 |
tgccttcgttcgtatatatctcaatatcactaatgaagtgatcaagagtttgaagtttgaactagatcacaaatgcagaggatgttgcttaaagcatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34692063 |
tgccttcgttcgtatatatctcaatatcactaatgaagtgatcaagagtttgaagtttgaactagatcacaaatgcagaggatgttgcttaaagcatttg |
34692162 |
T |
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| Q |
201 |
ccaaatgccacttgttctcgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
34692163 |
ccaaatgccacttgttctcgtt |
34692184 |
T |
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Back To:
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 38564402 - 38564354
Alignment:
| Q |
169 |
acaaatgcagaggatgttgcttaaagcatttgccaaatgccacttgttc |
217 |
Q |
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| T |
38564402 |
acaaatgcagaggatgttgcttaacgcatttgccatataccactcgttc |
38564354 |
T |
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