View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3309_low_28 (Length: 238)

Name: NF3309_low_28
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3309_low_28
NF3309_low_28
[»] chr2 (16 HSPs)
chr2 (1-230)||(39214730-39214959)
chr2 (58-228)||(39601861-39602031)
chr2 (57-183)||(39450414-39450540)
chr2 (62-174)||(39220086-39220198)
chr2 (60-174)||(39199516-39199630)
chr2 (57-180)||(39151816-39151939)
chr2 (60-171)||(39382247-39382358)
chr2 (57-180)||(39458127-39458250)
chr2 (61-171)||(39488225-39488335)
chr2 (110-229)||(44614345-44614464)
chr2 (57-183)||(39399044-39399170)
chr2 (1-51)||(39399051-39399101)
chr2 (57-180)||(39474308-39474431)
chr2 (57-134)||(39416403-39416480)
chr2 (1-34)||(39458210-39458243)
chr2 (146-199)||(39479278-39479331)
[»] chr6 (2 HSPs)
chr6 (1-53)||(16112406-16112458)
chr6 (57-174)||(16112348-16112465)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 39214959 - 39214730
Alignment:
Q  1 tctctttatggactgcaatctcttctcctctactgtcctcttcctcttgcaatgcccaatatctctctttagagactgcaatctcttctcatctacttgc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39214959 tctctttatggactgcaatctcttctcctctactttcctcttcctcttgcaatgcccaatatctctctttagagactgaaatctcttctcatctacttgc 39214860  T
Q  101 accttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaatta 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  39214859 accttccttttgcattcctcaaataatttttctaacatagcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaatta 39214760  T
Q  201 aatccgacaaaagaatatcatcttcatctc 230  Q
    ||||||||||||||||||||||||||||||    
T  39214759 aatccgacaaaagaatatcatcttcatctc 39214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 39602031 - 39601861
Alignment:
Q  58 aatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagc 157  Q
    ||||||| ||||||  ||||||||||| ||||| |||| || |  |||| | |||| ||||| |||| | || |||||||  |||||| |||||||||||    
T  39602031 aatatctatctttatggactgcaatctattctcttctaatttcgtcttcttattgccttcctgaaatgagttttctaacaatgcaaggcctttcttcagc 39601932  T
Q  158 aaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcatc 228  Q
     |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  39601931 gaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcatc 39601861  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 39450540 - 39450414
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 156  Q
    |||||||| |||| |  |||||||||||||| || ||||||| |  ||||||||| ||||||||||||||||| |||||||  | |||||||||||||||    
T  39450540 caatatctgtcttgatggactgcaatctcttttcttctactttctgcttccttttacattcctcaaataatttttctaacaatgtaaggtctttcttcag 39450441  T
Q  157 caaggaaaatgatttatcggttgattt 183  Q
    | |||||||||||||||| ||| ||||    
T  39450440 cgaggaaaatgatttatcagttaattt 39450414  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 39220198 - 39220086
Alignment:
Q  62 tctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaagg 161  Q
    ||||||||||  ||||| |||||  |||| || |||| |  ||||||||| || |||||||||||||| |||||||  |||||||||||||||||| |||    
T  39220198 tctctctttatggactgtaatcttctctcttcaactttctgcttccttttacactcctcaaataatttttctaacaccgcaaggtctttcttcagcgagg 39220099  T
Q  162 aaaatgatttatc 174  Q
    |||||||||||||    
T  39220098 aaaatgatttatc 39220086  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 39199516 - 39199630
Alignment:
Q  60 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaa 159  Q
    ||||||||||||  ||||||||||| ||||| || |||| |  ||||||||||||||||| ||||||||  |||| ||  | ||| |||||||||||| |    
T  39199516 tatctctctttatggactgcaatcttttctcttcaactttctgcttccttttgcattccttaaataattcttctagcagcgtaagctctttcttcagcga 39199615  T
Q  160 ggaaaatgatttatc 174  Q
    |||||||||||||||    
T  39199616 ggaaaatgatttatc 39199630  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 39151939 - 39151816
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 156  Q
    |||||| ||||||||  ||||||| ||||||||| |||||||||   |||||||||||||| |||| | |||| || |  |  ||||| |||||||||||    
T  39151939 caatatttctctttattgactgcagtctcttctcttctacttgccttttccttttgcattcatcaattgatttttccacaaatgcaagctctttcttcag 39151840  T
Q  157 caaggaaaatgatttatcggttga 180  Q
    |||||||| ||||||||| |||||    
T  39151839 caaggaaattgatttatcagttga 39151816  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 39382247 - 39382358
Alignment:
Q  60 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaa 159  Q
    ||||||||||||  ||||| ||||||||||| |||| || |  ||||| |||||||||| |||||||||  |||||||  | |||||||||||||||| |    
T  39382247 tatctctctttatggactgtaatctcttctcttctagtttctgcttccatttgcattccacaaataattcttctaacagcgtaaggtctttcttcagcga 39382346  T
Q  160 ggaaaatgattt 171  Q
    |||||| |||||    
T  39382347 ggaaaacgattt 39382358  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 39458250 - 39458127
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 156  Q
    |||||||||||||||  ||||||||||||||||| ||||||||   | |||||||||| ||||||||| |||| |||| ||  |  || |||||||||||    
T  39458250 caatatctctctttatggactgcaatctcttctcttctacttgtctcgtccttttgcaatcctcaaatgatttttctaccaatgtgagttctttcttcag 39458151  T
Q  157 caaggaaaatgatttatcggttga 180  Q
    | || ||||||||| ||| |||||    
T  39458150 cgagaaaaatgattcatcagttga 39458127  T

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Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 39488225 - 39488335
Alignment:
Q  61 atctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaag 160  Q
    ||||||||||| |||||||| ||||  ||| |||||||||   ||||||||||||||||||||| |  | |||| ||  ||||| ||||| |||||||||    
T  39488225 atctctctttatagactgcagtctcccctcttctacttgccttttccttttgcattcctcaaatgaggtttctaccaatgcaagttcttttttcagcaag 39488324  T
Q  161 gaaaatgattt 171  Q
    |||||||||||    
T  39488325 gaaaatgattt 39488335  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 44614464 - 44614345
Alignment:
Q  110 ttgcattcctcaaataatttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgaca 209  Q
    ||||||||||||||| |||| | ||||   ||||| |||||| ||||| ||||||||||  |||| | ||||||||||| ||||||| ||| || | ||     
T  44614464 ttgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacg 44614365  T
Q  210 aaagaatatcatcttcatct 229  Q
    || |||||||||||||||||    
T  44614364 aaggaatatcatcttcatct 44614345  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 39399044 - 39399170
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 156  Q
    |||||||||||||||  ||||||||||||||||| ||||||| |  |||||||||||||| || ||| ||||| |||| ||    ||  |||||||| ||    
T  39399044 caatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgcatttcttaaacaatttttctaccaatttaacttctttcttgag 39399143  T
Q  157 caaggaaaatgatttatcggttgattt 183  Q
    | | |||||||||||||| | ||||||    
T  39399144 cgatgaaaatgatttatcagctgattt 39399170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39399051 - 39399101
Alignment:
Q  1 tctctttatggactgcaatctcttctcctctactgtcctcttcctcttgca 51  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  39399051 tctctttatggactgcaatctcttctcttctactttcctcttccttttgca 39399101  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 39474308 - 39474431
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 156  Q
    |||||||||||||||  || |||||||||| ||  |||| ||||  | |||||| ||| ||||||||| |||| ||||  |  ||||| |||||||| ||    
T  39474308 caatatctctctttatggaatgcaatctctccttttctatttgcgtcgtcctttggcaatcctcaaatgatttttctacaaatgcaagttctttcttgag 39474407  T
Q  157 caaggaaaatgatttatcggttga 180  Q
      |||||||||||||||| |||||    
T  39474408 tgaggaaaatgatttatccgttga 39474431  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 39416403 - 39416480
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatcta 134  Q
    |||||||||||||||  || |||||||||||||  ||||||||||  | |||| ||| |||||||||| |||| ||||    
T  39416403 caatatctctctttatggaatgcaatctcttcttttctacttgcatgtcccttctgcgttcctcaaatgatttttcta 39416480  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39458243 - 39458210
Alignment:
Q  1 tctctttatggactgcaatctcttctcctctact 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  39458243 tctctttatggactgcaatctcttctcttctact 39458210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 39479278 - 39479331
Alignment:
Q  146 tctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaatt 199  Q
    |||||||||||| |||||||||||||||| || ||||| || | ||||||||||    
T  39479278 tctttcttcagcgaggaaaatgatttatcagtcgattttcccgaccttttaatt 39479331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16112458 - 16112406
Alignment:
Q  1 tctctttatggactgcaatctcttctcctctactgtcctcttcctcttgcaat 53  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||    
T  16112458 tctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaat 16112406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 16112465 - 16112348
Alignment:
Q  57 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttatctaacatagcaaggtctttcttcag 156  Q
    |||||||||||||||  ||||||||| ||||||| ||| ||  |  |||||||||||| | || ||| ||||| |||| || |  ||  || ||||||||    
T  16112465 caatatctctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaattcttaaacaatttttctaccaaattaacttcattcttcag 16112366  T
Q  157 caaggaaaatgatttatc 174  Q
    | ||||||||||||||||    
T  16112365 cgaggaaaatgatttatc 16112348  T

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