View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_29 (Length: 236)
Name: NF3309_low_29
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_29 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29436 - 29652
Alignment:
| Q |
1 |
cttagtatttacgacaaattaatatatcacattaataaattatttttctaagctttcattgggacccactgtagcgatgcgttacttcatcaaccactgt |
100 |
Q |
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| T |
29436 |
cttagtatttacgacaaattaatatatcacattaataaattatttttctaagctttcattgggacccactgtagcgatgcgttacttcatcaaccactgt |
29535 |
T |
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| Q |
101 |
gcaaaatacaacgcctgcattattacctccttacctcttcgataattccctttaaacttacctaaattgcttttacaccatttcaaatattttctttctt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29536 |
gcaaaatacaacgcctgc---attacctccttacctcttcgataattccctttaaacttacctaaattgcttttacaccatttcaaatattttctttctt |
29632 |
T |
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| Q |
201 |
ttttgttctaccaaaaaatt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
29633 |
ttttgttctaccaaaaaatt |
29652 |
T |
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