View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_33 (Length: 207)
Name: NF3309_low_33
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 2126259 - 2126443
Alignment:
| Q |
11 |
tccaagaaaatgtttctatctttagtttcatggtacttatacaaggaattagcacttctaac--taacttgttacttgcttcacaagcaaacaaagtagt |
108 |
Q |
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| T |
2126259 |
tccaacaaaatatttctatctttagtttcatggtacttatacaaggaattagcacttctaacattaacttgttacttgcttcacaagcaaacaaagtagt |
2126358 |
T |
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| Q |
109 |
taaataactttccaattaacaagctaactaacttaactaacttatgaaatataactactcaccctagtgtgtccaagataaatct |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2126359 |
taaataactttccaattaacaagctaactaacttaactaacttatgaaatataactactcaccctagtgtgtccaagataaatct |
2126443 |
T |
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