View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_4 (Length: 490)
Name: NF3309_low_4
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 175 - 483
Target Start/End: Original strand, 43621664 - 43621969
Alignment:
| Q |
175 |
ccttatccataactcgatatttgagtatacatgtctacatattaatttgcatgacatcattaattaattaggtatatatgatttaaacgtagtgggttgt |
274 |
Q |
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| T |
43621664 |
ccttatccataactcgatatttgagtatacatgtcaacatattaatttacatgacatcattaattaattaggtatatatgatttaaacgtagtgggttgt |
43621763 |
T |
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| Q |
275 |
tgtgtttgaattaaatttcaggattactatggccatggatttaaatggtgttggtctgatttacacctctccaactttggcagctgcttccacaaactgt |
374 |
Q |
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| T |
43621764 |
tgtgtttgaattaaatttcaggattactatggccatggatttaaatggtgttggtctgatttacacctctccaactttggcagctgcttccacaaactgt |
43621863 |
T |
|
| Q |
375 |
cttccagttatcaccttcttcttagcgctcctacttaggtacacatcatattattatacccttccattttattcaattatagcttattgaacgcttttcc |
474 |
Q |
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| T |
43621864 |
cttccagttatcaccttcttcttagcgctcctacttaggtacacatca---tattatacccttccattttattcaattatagcttattgaacgcttttcc |
43621960 |
T |
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| Q |
475 |
attcttatc |
483 |
Q |
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||||||||| |
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| T |
43621961 |
attcttatc |
43621969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 43621514 - 43621554
Alignment:
| Q |
44 |
cattcgctaaactaatgtagtcaatttctttcaatactttg |
84 |
Q |
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| T |
43621514 |
catttgctaaactaatgtagtcaatttctttcaatactttg |
43621554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43621468 - 43621496
Alignment:
| Q |
1 |
acctttcacaacaaaaatcattcgctctt |
29 |
Q |
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| T |
43621468 |
acctttcacaacaaaaatcattcgctctt |
43621496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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