View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_5 (Length: 460)
Name: NF3309_low_5
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 31841363 - 31841018
Alignment:
| Q |
17 |
acatggccaatgtaaaattaagtttataactttatactatcgtatatcatttactacacgtagtaatattgtacgctatgcagagcagaatgcaggacct |
116 |
Q |
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| T |
31841363 |
acatggccaatgtaaaattaagtttataactttatactatcgtatatcatttactacacgtagtagtattgtacgctatgcagagcagaatgcaggacct |
31841264 |
T |
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| Q |
117 |
gactcggttaatttatattgtacgtacgtatataaatgtacaaaatatcatgtatctatatcataaatgtagtgagtgatatcacggttggagtagaatt |
216 |
Q |
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| T |
31841263 |
gactcggttaatttatattgtacgtacgtatataaatgtacagaatatcatgtatctatatcataaatgtaatgagtgatatcacggttggagtagaatt |
31841164 |
T |
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| Q |
217 |
actgctcaacttttactacttgcatgattcataactatattatttgctgcattatatatatccacgtgcatgcaaacagaacctcttctgtgtattttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841163 |
actgctcaacttttactacttgcatgattcataactatattatttgctgcattatatatatccacgtgcatgcaaacagaacctcttctgtgtattttcc |
31841064 |
T |
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| Q |
317 |
tccgtgcgtgcagacttgttctttctattttgagctgctgatcaag |
362 |
Q |
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| T |
31841063 |
tccgtgcgtgcagacttgttctttctattttgagctgctgatcaag |
31841018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 451
Target Start/End: Complemental strand, 31840409 - 31840320
Alignment:
| Q |
360 |
aagttttaatggagctatggttatttagtttgagcaactgaaattttgtttctannnnnnnaattagctatggaaaagttgacatatgtata |
451 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31840409 |
aagttttaatggagct--ggttatttagtttgagcaactgaaattttgtttctatttttttaattagctatggaaaagttgacatatgtata |
31840320 |
T |
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