View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_6 (Length: 436)
Name: NF3309_low_6
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 8340730 - 8341155
Alignment:
| Q |
1 |
cttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacactccacggctgttagtttgccatcactaaagatgttgatgatcgacattgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8340730 |
cttgtttgttcgtcagtctctctggtgcagttcatgtaagcatccaacactccacggctgttagtttgccatcactaaagatgttgatgatcgacattgg |
8340829 |
T |
|
| Q |
101 |
ttatgctgaagtatcttctttgaatgcacttcttgatggctgctcaagtatagaaattctggatctttgcttttcagcccaaagcttggataaagtttgt |
200 |
Q |
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| T |
8340830 |
ttatgttgaagtatcttctgtgaatgcacttcttgatggctgctcaagtatagaaattctggatcttggcttttcagcccaaagcttggataaagtttgt |
8340929 |
T |
|
| Q |
201 |
gtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaataccttaacattaccc |
300 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8340930 |
gtcccgccttccttgaaaaggttgaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaataccttaacattaccc |
8341029 |
T |
|
| Q |
301 |
aaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttcccacgtcgcttggttccatcgtcccttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8341030 |
aaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttcccacgtcgcttggttccatcgtaccttt |
8341129 |
T |
|
| Q |
401 |
gcacaacctctttggcgctctctctg |
426 |
Q |
| |
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| T |
8341130 |
gcacaacctctttggcgctctctctg |
8341155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 426
Target Start/End: Original strand, 17477679 - 17478100
Alignment:
| Q |
5 |
tttgttcgtcagtctctctggtgcagttcatgtaagcatccaacactccacggctgttagtttgccatcactaaagatgttgatgatcgacattggttat |
104 |
Q |
| |
|
||||||| ||||||||| ||||| | || ||| | |||||||||||| |||| ||||||| || |||||||||||| || | ||| | |||||| || |
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| T |
17477679 |
tttgttcctcagtctctgtggtgaaatttgtgttaacatccaacactctacggtgattagtttaccgtcactaaagatgctgctaatcaatattggtcat |
17477778 |
T |
|
| Q |
105 |
gctgaagtatcttctttgaatgcacttcttgatggctgctcaagtatagaaattctggatctttgcttttcagcccaaagcttggataaagtttgtgtct |
204 |
Q |
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|||||| |||| | |||||||| || ||||||| ||| ||||||| |||| ||||| ||||||| | |||||||| || |||||||| || |
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| T |
17477779 |
atggaagtaccttccattaatgcactcctctgtggctgcccaaatatagaatctctgaatcttggcttttctccgcaaagcttagacaaagtttgcatcc |
17477878 |
T |
|
| Q |
205 |
cgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaataccttaacattacccaaat |
304 |
Q |
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| ||| ||||||||||| | ||||||||| | | |||| |||||| |||||| | ||| ||||||| ||| ||||| | ||||||||||||||| ||| |
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|
| T |
17477879 |
cacctcccttgaaaaggcttaaaatcaccgtagcaaatgttgttggggcttaccttgaaataaatgcaccgaatcttgagtaccttaacattaccggaat |
17477978 |
T |
|
| Q |
305 |
cacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttcccacgtcgcttggttccatcgtccctttgcac |
404 |
Q |
| |
|
|||||||||| ||| ||||| | |||| | ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||| ||| |
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| T |
17477979 |
cacattcggccaagttttcaccatgtataacttgcacaatgtggtggaagcgtatcttgatgtctttccccaatcgcttggttccgtcgtcgctttacac |
17478078 |
T |
|
| Q |
405 |
aacctctttggcgctctctctg |
426 |
Q |
| |
|
|| ||| |||| |||||||||| |
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|
| T |
17478079 |
aatctccttggtgctctctctg |
17478100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 180 - 374
Target Start/End: Complemental strand, 29585551 - 29585354
Alignment:
| Q |
180 |
caaagcttggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatg---ttggagcttacttggaagtaaatgcgccgg |
276 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| | |||||| |||| ||| |||| |||||| |||| | |||| | ||| |||||||||| | |
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| T |
29585551 |
caaagcttggacaaagtttgtgtcccaccttccttaagaaggttggaaattgccaatgaggatgatgaagttggggtttaccttgaaataaatgcgcctg |
29585452 |
T |
|
| Q |
277 |
atcttcaataccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttccc |
374 |
Q |
| |
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||||| | |||||||||||||||| ||||||||| ||| | | ||||||| |||||| ||| | ||| || ||||||||||||||||||||||||||| |
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| T |
29585451 |
atcttgagtaccttaacattacccgaatcacatttggccaggatttcagcatgtacaacttacacaaagtcgtggaagcgtatcttgatgtctttccc |
29585354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 372
Target Start/End: Complemental strand, 4427826 - 4427641
Alignment:
| Q |
187 |
tggataaagtttgtgtctcgccttccttgaaaaggttaaaaatcaccattgagaatgatgttggagcttacttggaagtaaatgcgccggatcttcaata |
286 |
Q |
| |
|
||||||||||||| ||| | ||||| ||||||||||| | ||||| |||||| ||||| ||||| |||||| | ||| | || || ||||||||| | || |
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|
| T |
4427826 |
tggataaagtttgcgtcccaccttctttgaaaaggttgacaatcatcattgataatgaagttggggcttaccttgaaatgaaagcaccggatcttgagta |
4427727 |
T |
|
| Q |
287 |
ccttaacattacccaaatcacattcggcgaaggtttcagcttgtacagcttgcccaacgtggtggaagcgtatcttgatgtctttc |
372 |
Q |
| |
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| T |
4427726 |
cctttacatcaacggaatcacatccggcgaagtttttagcatgtacaacttgcacaatgtggtggaagcacatcttaatgtttttc |
4427641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 24935062 - 24935109
Alignment:
| Q |
208 |
cttccttgaaaaggttaaaaatcaccattgagaatgatgttggagctt |
255 |
Q |
| |
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|||||||||| |||||||||||||| |||||||||||||||| |||| |
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| T |
24935062 |
cttccttgaagaggttaaaaatcactgttgagaatgatgttggggctt |
24935109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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