View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_7 (Length: 425)
Name: NF3309_low_7
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_7 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42471347 - 42471130
Alignment:
| Q |
1 |
gcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttacttgtttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42471347 |
gcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacatcagcgatgggtttacttgtttcc |
42471248 |
T |
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| Q |
101 |
gtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagcatactttttcaaagatgaatacaacacatgtgtcctatt |
200 |
Q |
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| T |
42471247 |
atggcactgtctttgaaaatggattggatgcagctttttcctctcacaagatcaatgaagcatac-------aagatgaatacaacacatgtgtcctatt |
42471155 |
T |
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| Q |
201 |
tgttccaggctcaacagacatgtat |
225 |
Q |
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| T |
42471154 |
tgttccaggctcaacagacatgtat |
42471130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 220 - 394
Target Start/End: Complemental strand, 42468438 - 42468263
Alignment:
| Q |
220 |
atgtatcctgtgactcaaactcttgacaattggaaatctcttcggggaataatacctgaacagaattaaccgtgactggtatgactgtctaatcgtcata |
319 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42468438 |
atgtatcttgtgactcgaactcttgacaattggaaatctctttggggaataatacctgaacagaattaaccgtgactggtatgactgtgtaatcgtcata |
42468339 |
T |
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| Q |
320 |
atgctgccagtactgtgatactt-aagaataaaaattgatgtaataaaagtgtgactctttgttgttttccacata |
394 |
Q |
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| T |
42468338 |
atgctgccagtactgtgatacttaaagaataaaaattgatgtaataaaagtgtgactccttgttgttttccacata |
42468263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 3352436 - 3352608
Alignment:
| Q |
3 |
ttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttacttgtttccgt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||| ||||||| ||||||||| |
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| T |
3352436 |
ttacttattcaaaggagacaagtatgctcgtatagattatggaaccaaccgtctggttcaaagtatcaagaacattatcgacgggtttatgtgtttccgt |
3352535 |
T |
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| Q |
103 |
ggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagcatactttttcaaag |
175 |
Q |
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| T |
3352536 |
ggcacaatctttgaaaatggaattgatgcagcttttgcttctcataagactaatgaagcctactttttcaaag |
3352608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42046160 - 42046115
Alignment:
| Q |
1 |
gcttacttattcaaaggagacaagtatgctcgtatagattatggaa |
46 |
Q |
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| T |
42046160 |
gcttacttatttaaaggagaccaatatgctcgtatagactatggaa |
42046115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 63348 - 63205
Alignment:
| Q |
3 |
ttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttacttgtttccgt |
102 |
Q |
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|||||| |||| |||||||||||||||||||||||| ||||| || || ||||| ||||||| |||| | |||| | | ||||||||||||||||| |
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| T |
63348 |
ttacttgttcagaggagacaagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaacagcgggtttacttgtttccga |
63249 |
T |
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| Q |
103 |
ggcactgtctttgaaaatggattggatgcagcttttgcctctca |
146 |
Q |
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| T |
63248 |
gacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
63205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 37292 - 37149
Alignment:
| Q |
3 |
ttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggtttacttgtttccgt |
102 |
Q |
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|||||| |||| |||||| ||||||||||||||||| ||||| || || ||||| ||||||| |||| | |||| | | ||||||||||||||||| |
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| T |
37292 |
ttacttgttcagaggagataagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaacagcgggtttacttgtttccga |
37193 |
T |
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| Q |
103 |
ggcactgtctttgaaaatggattggatgcagcttttgcctctca |
146 |
Q |
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| T |
37192 |
gacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
37149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 14452719 - 14452764
Alignment:
| Q |
5 |
acttattcaaaggagacaagtatgctcgtatagattatggaaccaa |
50 |
Q |
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| T |
14452719 |
acttattcaaaggagacaagtatgctcgtatagactatggcaccaa |
14452764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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