View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3309_low_8 (Length: 422)

Name: NF3309_low_8
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3309_low_8
NF3309_low_8
[»] chr2 (17 HSPs)
chr2 (19-347)||(34220190-34220531)
chr2 (351-422)||(42439966-42440037)
chr2 (345-422)||(35962689-35962766)
chr2 (351-419)||(32127260-32127328)
chr2 (351-422)||(2958217-2958287)
chr2 (351-422)||(6403920-6403991)
chr2 (351-422)||(16405580-16405651)
chr2 (351-422)||(41251750-41251821)
chr2 (351-422)||(18981597-18981667)
chr2 (351-415)||(17445162-17445226)
chr2 (371-422)||(8147351-8147402)
chr2 (371-421)||(45418583-45418633)
chr2 (371-419)||(44084722-44084770)
chr2 (355-422)||(31581738-31581805)
chr2 (377-422)||(771005-771050)
chr2 (373-421)||(8059450-8059498)
chr2 (371-421)||(26237957-26238006)
[»] chr3 (19 HSPs)
chr3 (117-276)||(44253879-44254036)
chr3 (350-422)||(22968560-22968632)
chr3 (355-419)||(34084241-34084305)
chr3 (351-422)||(19390126-19390197)
chr3 (351-422)||(39771770-39771841)
chr3 (351-422)||(6269542-6269613)
chr3 (350-422)||(6503685-6503757)
chr3 (355-419)||(22922141-22922205)
chr3 (351-422)||(11018328-11018399)
chr3 (371-422)||(19565617-19565668)
chr3 (371-422)||(45182981-45183032)
chr3 (286-348)||(44254064-44254126)
chr3 (354-422)||(40081855-40081922)
chr3 (371-422)||(45335875-45335926)
chr3 (371-421)||(6931011-6931061)
chr3 (371-422)||(33040953-33041004)
chr3 (370-419)||(27935177-27935226)
chr3 (371-420)||(5354709-5354758)
chr3 (371-408)||(6890998-6891035)
[»] chr7 (12 HSPs)
chr7 (351-422)||(5555467-5555538)
chr7 (355-419)||(8394109-8394173)
chr7 (351-422)||(3114212-3114283)
chr7 (355-419)||(36630800-36630864)
chr7 (351-422)||(14777223-14777294)
chr7 (371-422)||(34389172-34389223)
chr7 (371-422)||(8867847-8867898)
chr7 (371-422)||(37002260-37002311)
chr7 (380-422)||(35090177-35090219)
chr7 (371-419)||(33685564-33685612)
chr7 (371-416)||(10876829-10876874)
chr7 (375-422)||(26624749-26624797)
[»] chr6 (10 HSPs)
chr6 (347-422)||(34948874-34948949)
chr6 (351-422)||(398597-398668)
chr6 (351-422)||(13837801-13837872)
chr6 (371-422)||(18339106-18339157)
chr6 (377-422)||(29743289-29743334)
chr6 (371-422)||(28996730-28996781)
chr6 (371-421)||(31028481-31028531)
chr6 (371-420)||(24697935-24697984)
chr6 (371-407)||(13647017-13647053)
chr6 (386-418)||(3050094-3050126)
[»] chr5 (22 HSPs)
chr5 (354-422)||(13817960-13818028)
chr5 (354-422)||(10033910-10033978)
chr5 (351-422)||(39434676-39434747)
chr5 (355-419)||(1776495-1776559)
chr5 (351-422)||(26283434-26283505)
chr5 (351-418)||(3155751-3155818)
chr5 (351-422)||(36293737-36293808)
chr5 (349-422)||(37254619-37254692)
chr5 (371-422)||(12278976-12279027)
chr5 (371-422)||(17332667-17332718)
chr5 (358-421)||(19985926-19985989)
chr5 (371-422)||(31501832-31501883)
chr5 (371-422)||(31680367-31680418)
chr5 (351-422)||(39657622-39657693)
chr5 (354-407)||(14316641-14316694)
chr5 (351-383)||(16154989-16155021)
chr5 (350-381)||(16334015-16334046)
chr5 (389-422)||(16155015-16155048)
chr5 (384-421)||(28801300-28801337)
chr5 (385-422)||(33430335-33430372)
chr5 (349-397)||(26543906-26543954)
chr5 (373-421)||(36291373-36291421)
[»] scaffold0002 (1 HSPs)
scaffold0002 (350-422)||(480573-480645)
[»] chr4 (29 HSPs)
chr4 (351-419)||(25930688-25930756)
chr4 (355-419)||(36382464-36382528)
chr4 (351-422)||(20129290-20129361)
chr4 (351-422)||(47500753-47500824)
chr4 (351-421)||(13012168-13012238)
chr4 (349-422)||(34407400-34407473)
chr4 (350-422)||(29319821-29319893)
chr4 (351-422)||(26439395-26439466)
chr4 (354-422)||(10353000-10353068)
chr4 (371-422)||(30216858-30216909)
chr4 (351-422)||(43143700-43143771)
chr4 (354-422)||(17511350-17511417)
chr4 (350-422)||(43355883-43355955)
chr4 (371-422)||(6690351-6690402)
chr4 (372-422)||(42333892-42333942)
chr4 (374-422)||(3293012-3293060)
chr4 (354-419)||(40528996-40529063)
chr4 (354-421)||(50205194-50205261)
chr4 (354-420)||(27363344-27363410)
chr4 (372-422)||(30077747-30077797)
chr4 (354-415)||(6235515-6235576)
chr4 (351-412)||(7769308-7769369)
chr4 (373-422)||(30109958-30110007)
chr4 (371-408)||(49908782-49908819)
chr4 (372-419)||(13392989-13393036)
chr4 (372-419)||(13396128-13396175)
chr4 (388-422)||(44156668-44156702)
chr4 (371-408)||(5517494-5517531)
chr4 (371-408)||(50720476-50720513)
[»] chr1 (9 HSPs)
chr1 (350-422)||(26144234-26144306)
chr1 (351-422)||(7433425-7433496)
chr1 (358-422)||(32982172-32982236)
chr1 (354-422)||(42311057-42311125)
chr1 (349-422)||(35907530-35907603)
chr1 (351-422)||(23313218-23313290)
chr1 (354-421)||(41972392-41972458)
chr1 (375-419)||(3828988-3829032)
chr1 (371-407)||(44352614-44352650)
[»] chr8 (11 HSPs)
chr8 (355-419)||(15838270-15838334)
chr8 (354-422)||(29728502-29728570)
chr8 (351-422)||(39914495-39914566)
chr8 (351-422)||(34136941-34137012)
chr8 (354-422)||(3648910-3648978)
chr8 (371-422)||(4404008-4404059)
chr8 (375-422)||(16788141-16788188)
chr8 (371-421)||(36408551-36408601)
chr8 (371-422)||(23402108-23402159)
chr8 (371-419)||(2729315-2729363)
chr8 (371-420)||(10397158-10397207)
[»] scaffold2142 (1 HSPs)
scaffold2142 (351-422)||(502-573)
[»] scaffold0069 (1 HSPs)
scaffold0069 (351-422)||(17822-17893)
[»] scaffold0502 (1 HSPs)
scaffold0502 (371-422)||(5230-5281)
[»] scaffold0154 (1 HSPs)
scaffold0154 (371-422)||(31480-31531)


Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 347
Target Start/End: Original strand, 34220190 - 34220531
Alignment:
Q  19 aggtagctcacccaccatgattccaaagcacttaaatattttggtgcatggcattaaacagtattttttatgaatcagcatatttattaaacaacacgta 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||    
T  34220190 aggtggctcacccaccatgattccaaagcacttaaatattttggtgcatggcattaaacagtatttt-tatgaatcagcatatttattaaacaaccggta 34220288  T
Q  119 tcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacagca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34220289 tcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacagca 34220388  T
Q  219 gcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctgt--------------acaaagcgaaactcccctaatgcaaaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||| ||||||    
T  34220389 gcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctgtacagcagcacaaaaacaaagcgaaactcccctaacgcaaaa 34220488  T
Q  305 gacaatcctttgggttccaactccattcgtataaaagacatgg 347  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  34220489 gacaatcatttgggttccaactccattcgtataaaagacatgg 34220531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 42439966 - 42440037
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 42440037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 422
Target Start/End: Original strand, 35962689 - 35962766
Alignment:
Q  345 tggaggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  35962689 tggaagcatgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagac 35962766  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 419
Target Start/End: Complemental strand, 32127328 - 32127260
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  32127328 catgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacatta 32127260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 2958287 - 2958217
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataa-ttttgcacattagac 2958217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 6403991 - 6403920
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6403991 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 6403920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 16405580 - 16405651
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  16405580 catgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttgcacgttagac 16405651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 41251821 - 41251750
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 41251750  T

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Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 18981597 - 18981667
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||    
T  18981597 catgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgcacattagac 18981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 17445226 - 17445162
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcac 415  Q
    |||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcac 17445162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 8147351 - 8147402
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  8147351 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcacattagac 8147402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 45418583 - 45418633
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  45418583 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattaga 45418633  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 44084770 - 44084722
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  44084770 ggcgaccccgggcagtcgcccgggctcgatcgataatttttgcacatta 44084722  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 31581805 - 31581738
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||| | ||||| |||||||| |||||||    
T  31581805 ggcggttctactgtatggcgaccacgggcggtcgcccaggctcgagcgatactttttgcatattagac 31581738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 771005 - 771050
Alignment:
Q  377 cccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||    
T  771005 cccgggcggtcgcccgggctcgatcgataacttttgcacattagac 771050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 8059498 - 8059450
Alignment:
Q  373 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||    
T  8059498 cgaccccggccgatcgcccaggctcaatcgataatttttgcacattaga 8059450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 26237957 - 26238006
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  26237957 ggcgaccccgggcggtcgcccgggctcgatcgat-atttttgcaaattaga 26238006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 117 - 276
Target Start/End: Original strand, 44253879 - 44254036
Alignment:
Q  117 tatcatacaagacgtacgataggggacaaagacaaaactgtacaaggggcctgaatttgcggtaaccccaaaaccaaacctaaatctactgtcatgacag 216  Q
    ||||||||||| | | ||||||||||||||||| |||||| |||| ||||| |||||||||||  ||| |||| |||||| ||  |||||||||||||||    
T  44253879 tatcatacaaggcatgcgataggggacaaagacgaaactgaacaaagggcccgaatttgcggt--cccaaaaatcaaaccaaatactactgtcatgacag 44253976  T
Q  217 cagcactgccgatgccaacacagcaggcagtaaccgcgccagaccccaaactcgcagctg 276  Q
    |||||||||||  ||||||| ||||||||||||  |||||||||||||||| ||||||||    
T  44253977 cagcactgccgtagccaacatagcaggcagtaattgcgccagaccccaaacccgcagctg 44254036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 22968632 - 22968560
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  22968632 gcatgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagac 22968560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 34084305 - 34084241
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacatta 34084241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 19390126 - 19390197
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagac 19390197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 39771770 - 39771841
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagac 39771841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 6269613 - 6269542
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| | |||| |||||||||||| |||| ||| ||||||||||||||||||||||||    
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagac 6269542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 6503757 - 6503685
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||  |||||  ||||||||||||||||||||||||||| |||||| ||||||||| |||||||    
T  6503757 gcatgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttgcaaattagac 6503685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 22922141 - 22922205
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    |||||||| |||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttgcacatta 22922205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 11018399 - 11018328
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||  |||||  |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  11018399 catgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttgcacattagac 11018328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 19565668 - 19565617
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  19565668 ggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagac 19565617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 45182981 - 45183032
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  45182981 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagac 45183032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 44254064 - 44254126
Alignment:
Q  286 aaactcccctaatgcaaaagacaatcctttgggttccaactccattcgtataaaagacatgga 348  Q
    ||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||    
T  44254064 aaattcccctaacgcaaaagacaatccttcgggttccaactccattcatagaaaagacatgga 44254126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 40081922 - 40081855
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||| | ||  |||||||||||||| |||||||||||||| |||||||||    
T  40081922 gggcggttctaccgtatggcgactctgga-ggtcgcccgggctcgatcgataatttttgaacattagac 40081855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 45335875 - 45335926
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  45335875 ggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagac 45335926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 6931061 - 6931011
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  6931061 ggcgaccccggacggtcgcccgggctcgatcgataatttttgcgcattaga 6931011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 33040953 - 33041004
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||| ||||||| || ||||||||||||| |||||||    
T  33040953 ggcgaccccgggcggtcgctcgggctcgattgataatttttgcatattagac 33041004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 27935177 - 27935226
Alignment:
Q  370 tggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    |||| |||| |||| ||||||||||||| |||||||||||||||||||||    
T  27935177 tggcaaccctgggcagtcgcccgggctcgatcgataatttttgcacatta 27935226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 5354709 - 5354758
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattag 420  Q
    ||||||||||||||||||||||||||| |||  |||||||  ||||||||    
T  5354709 ggcgaccccgggcggtcgcccgggctcgatccttaattttctcacattag 5354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 408
Target Start/End: Original strand, 6890998 - 6891035
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatt 408  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  6890998 ggcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 5555467 - 5555538
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 5555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 8394109 - 8394173
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacatta 8394173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 3114283 - 3114212
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  3114283 catgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagac 3114212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 36630800 - 36630864
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacatta 36630864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 14777294 - 14777223
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagac 14777223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 34389223 - 34389172
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34389223 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 34389172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 8867898 - 8867847
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  8867898 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcatattagac 8867847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 37002311 - 37002260
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||  ||| ||| ||||||||||||||||||||||||    
T  37002311 ggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagac 37002260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 35090177 - 35090219
Alignment:
Q  380 gggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  35090177 gggcggtcgcccgggctcgatcaataatttttgcacattagac 35090219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 33685564 - 33685612
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||| ||| ||||| ||||||| |||||||||||||||||||||    
T  33685564 ggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacatta 33685612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 10876874 - 10876829
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcaca 416  Q
    ||||| |||| | |||||||||||||| ||||||||||||||||||    
T  10876874 ggcgaacccgtgtggtcgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 26624749 - 26624797
Alignment:
Q  375 accccgggcggtcgcccgggctc-aatcgataatttttgcacattagac 422  Q
    |||||||||||||||| |||||| | ||||||||||||||| |||||||    
T  26624749 accccgggcggtcgcctgggctcgattcgataatttttgcatattagac 26624797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 34948949 - 34948874
Alignment:
Q  347 gaggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  34948949 gaggcatgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagac 34948874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 398597 - 398668
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 398668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 13837801 - 13837872
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||||||||| |||| |||| || |||||||||||||| |||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttgtacattagac 13837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 18339106 - 18339157
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagac 18339157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 29743289 - 29743334
Alignment:
Q  377 cccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  29743289 cccgggcggttgcccgggctcaatcgataatttttgcacattagac 29743334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 28996730 - 28996781
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  28996730 ggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagac 28996781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 31028531 - 31028481
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    |||||||||| ||||| |||||| ||| |||||||||||||||||||||||    
T  31028531 ggcgaccccgagcggttgcccggactcgatcgataatttttgcacattaga 31028481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 24697984 - 24697935
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattag 420  Q
    ||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  24697984 ggcgaccccggacactcgcccgggctcaatcgataattttttcacattag 24697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 13647017 - 13647053
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataat 407  Q
    ||||||||||||||||||||||||||| |||||||||    
T  13647017 ggcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 3050094 - 3050126
Alignment:
Q  386 tcgcccgggctcaatcgataatttttgcacatt 418  Q
    |||||||||||||||| ||||||||||||||||    
T  3050094 tcgcccgggctcaatcaataatttttgcacatt 3050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 13817960 - 13818028
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagac 13818028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 10033910 - 10033978
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||    
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagac 10033978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 39434676 - 39434747
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagac 39434747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 1776559 - 1776495
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacatta 1776495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 26283505 - 26283434
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagac 26283434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 418
Target Start/End: Complemental strand, 3155818 - 3155751
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatt 418  Q
    |||||||||||||| |||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttgcacatt 3155751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 36293808 - 36293737
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| ||||||||||| ||||||| |||| ||| |||||||||||||| |||||||||    
T  36293808 catgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagac 36293737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 37254619 - 37254692
Alignment:
Q  349 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||  ||||   ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  37254619 ggcatgggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagac 37254692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 12279027 - 12278976
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  12279027 ggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagac 12278976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 17332718 - 17332667
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  17332718 ggcgaccccgggcgttcgcccgggctcgatcgataatttttgcatattagac 17332667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 19985926 - 19985989
Alignment:
Q  358 ggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    |||| ||||||||| ||||| |||||||||| ||| |||| |||||||||||||||||||||||    
T  19985926 ggttttaccgtatgacgacctcgggcggtcgtccgagctcgatcgataatttttgcacattaga 19985989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 31501883 - 31501832
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  31501883 ggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagac 31501832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 31680367 - 31680418
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  31680367 ggcgaccccgggcggtcgcccgggctcgatcgataatttttccgcattagac 31680418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 39657693 - 39657622
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||  |||||||||||| | ||||||  ||||||| || |||||||||||||||||||||    
T  39657693 catgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttgcacattagac 39657622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataat 407  Q
    |||||||||||||||||||||| | ||||||||||||| ||||| |||||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Original strand, 16154989 - 16155021
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggc 383  Q
    |||||||||||||||||||||||||||||||||    
T  16154989 catgggcggttctaccgtatggcgaccccgggc 16155021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 350 - 381
Target Start/End: Complemental strand, 16334046 - 16334015
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgg 381  Q
    ||||||||||||||||||||||||||||||||    
T  16334046 gcatgggcggttctaccgtatggcgaccccgg 16334015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 16155015 - 16155048
Alignment:
Q  389 cccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||| ||||||||||||||||||||||||    
T  16155015 cccgggctcgatcgataatttttgcacattagac 16155048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 28801300 - 28801337
Alignment:
Q  384 ggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  28801300 ggtcgccctggctcgatcgataatttttgcacattaga 28801337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 385 - 422
Target Start/End: Original strand, 33430335 - 33430372
Alignment:
Q  385 gtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  33430335 gtcgcccgggctcgatcgataatttttgcgcattagac 33430372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 26543954 - 26543906
Alignment:
Q  349 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctc 397  Q
    |||| |||||||| |||||   |||||||||||||||||||||||||||    
T  26543954 ggcaggggcggttttaccgcccggcgaccccgggcggtcgcccgggctc 26543906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 36291373 - 36291421
Alignment:
Q  373 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    |||| ||||||||||| ||||| || ||| |||||||||||||||||||    
T  36291373 cgactccgggcggtcgtccgggttcgatcaataatttttgcacattaga 36291421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 480645 - 480573
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  480645 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 480573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 351 - 419
Target Start/End: Original strand, 25930688 - 25930756
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacatta 25930756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 36382528 - 36382464
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacatta 36382464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 20129290 - 20129361
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 20129361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 47500753 - 47500824
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 47500824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 13012168 - 13012238
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13012168 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaga 13012238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 34407473 - 34407400
Alignment:
Q  349 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  34407473 ggcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagac 34407400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 29319893 - 29319821
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||| |||||| |||||||| || ||||| ||||||||||||||||||||||||    
T  29319893 gcatgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagac 29319821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 26439466 - 26439395
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagac 26439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 10353068 - 10353000
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||  |||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10353068 gggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagac 10353000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 30216909 - 30216858
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30216909 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 30216858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 43143771 - 43143700
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||  |||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43143771 catgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 43143700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 17511417 - 17511350
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||| || ||||||||| | ||| ||||||||||||||||||||||||    
T  17511417 gggcggttctaccgtatggcgaccctgg-cggtcgcccagactcgatcgataatttttgcacattagac 17511350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 43355883 - 43355955
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||| ||||| | |||||||| ||| |||||||||||||  |||||||||||||||||||||||    
T  43355883 gcatgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagac 43355955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Complemental strand, 6690402 - 6690351
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  6690402 ggcgaccccgggcggtcgcccgggctcgatcgataatttttgcgcattagac 6690351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 42333942 - 42333892
Alignment:
Q  372 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  42333942 gcgatcccgggcggtcgtccgggctcaatcgataatttttgcacattagac 42333892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 3293060 - 3293012
Alignment:
Q  374 gaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttgcccattagac 3293012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 40528996 - 40529063
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggc--ggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||||||||||| ||||  ||||| |||| ||| |||||||||||||||||||||    
T  40528996 gggcggttctaccgtatggcgaccctgggcgaggtcgtccggactcgatcgataatttttgcacatta 40529063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 50205261 - 50205194
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||||  |||||  ||||| |||||||||||||||| |||| |||||||||||||||||||||||    
T  50205261 gggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatcgataatttttgcacattaga 50205194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 27363344 - 27363410
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattag 420  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||||   |||||||| |||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatcgaatttttttgcatattag 27363410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 372 - 422
Target Start/End: Complemental strand, 30077797 - 30077747
Alignment:
Q  372 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  30077797 gcgacctcgggcggtcgcccaggctcaatcgataaattttgcacattagac 30077747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 6235515 - 6235576
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcac 415  Q
    ||||||||||||||||||||||  | |||||||||| ||||||| | |||||||||||||||    
T  6235515 gggcggttctaccgtatggcgattctgggcggtcgctcgggctcgaccgataatttttgcac 6235576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 7769308 - 7769369
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttg 412  Q
    |||||||||||  |||||  ||||||||| ||||||||||||||||| ||||||||||||||    
T  7769308 catgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 30109958 - 30110007
Alignment:
Q  373 cgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  30109958 cgaccccggacggtcgcccggactcgatcgataatttttgcacattagac 30110007  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 49908819 - 49908782
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatt 408  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49908819 ggcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 13393036 - 13392989
Alignment:
Q  372 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    |||||||||| |||||||||||||||||||||| | ||||||| ||||    
T  13393036 gcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13392989  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 419
Target Start/End: Complemental strand, 13396175 - 13396128
Alignment:
Q  372 gcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    |||||||||| |||||||||||||||||||||| | ||||||| ||||    
T  13396175 gcgaccccggacggtcgcccgggctcaatcgatgacttttgcatatta 13396128  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 44156668 - 44156702
Alignment:
Q  388 gcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||||||||||||||||||||    
T  44156668 gcccgggctcaaccgataatttttgcacattagac 44156702  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 5517531 - 5517494
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatt 408  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  5517531 ggcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 50720513 - 50720476
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatt 408  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  50720513 ggcgacctcgggcggtcgcccgggctcaatcaataatt 50720476  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 26144234 - 26144306
Alignment:
Q  350 gcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26144234 gcatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 26144306  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 7433425 - 7433496
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagac 7433496  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 32982236 - 32982172
Alignment:
Q  358 ggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttgcacattagac 32982172  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 42311125 - 42311057
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttgcacattagac 42311057  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 35907530 - 35907603
Alignment:
Q  349 ggcatgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||  ||||   ||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  35907530 ggcatgggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagac 35907603  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 23313218 - 23313290
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataattt-ttgcacattagac 422  Q
    ||||||||||||||||||||||||| | |||||||| |||||||||| || ||| |||| |||||||||||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgatttgttgcacattagac 23313290  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 41972458 - 41972392
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||||| |||||   ||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  41972458 gggcggttccaccgtccagcgaccccgggcggtcgcctgg-ctcgatcgataatttttgcacattaga 41972392  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 3828988 - 3829032
Alignment:
Q  375 accccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||| ||||||| |||| || |||||||||||||||||||||    
T  3828988 accccggacggtcgctcgggttcgatcgataatttttgcacatta 3829032  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 44352650 - 44352614
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataat 407  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44352650 ggcgaccccgggaggtcgcccgggctcgatcgataat 44352614  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 15838270 - 15838334
Alignment:
Q  355 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacatta 15838334  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 29728570 - 29728502
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||    
T  29728570 gggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagac 29728502  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 39914495 - 39914566
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||| |||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagac 39914566  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 34137012 - 34136941
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||| ||||  ||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  34137012 catgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttgcacattagac 34136941  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 3648978 - 3648910
Alignment:
Q  354 gggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||||||| || || | ||||||||||||| ||||||||||||| ||||||||||    
T  3648978 gggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttttcacattagac 3648910  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 4404008 - 4404059
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  4404008 ggcgaccccaggcggtcgcccgggctcgatcgataatttttgcacattagac 4404059  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 16788188 - 16788141
Alignment:
Q  375 accccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttgcacattagac 16788141  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 36408551 - 36408601
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattaga 421  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  36408551 ggcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattaga 36408601  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 23402108 - 23402159
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  23402108 ggcgaccccgggcggtcgcccgggctcgatcgataatctttgcatattagac 23402159  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 2729363 - 2729315
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacatta 419  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  2729363 ggcgaccccgggcggacgcccgggctcgatcgataatttttacacatta 2729315  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 10397207 - 10397158
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattag 420  Q
    |||||| ||||||  |||||||||||||||||||||||| | ||||||||    
T  10397207 ggcgactccgggcactcgcccgggctcaatcgataatttcttcacattag 10397158  T

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Target: scaffold2142 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 502 - 573
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||| ||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  502 catgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagac 573  T

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Target: scaffold0069 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 17822 - 17893
Alignment:
Q  351 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    |||||||||||||||||| ||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||    
T  17822 catgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagac 17893  T

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Target: scaffold0502 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 5230 - 5281
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagac 5281  T

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Target: scaffold0154 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 31480 - 31531
Alignment:
Q  371 ggcgaccccgggcggtcgcccgggctcaatcgataatttttgcacattagac 422  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||| |||||    
T  31480 ggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagac 31531  T

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