View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_17 (Length: 309)
Name: NF3310_high_17
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 31195009 - 31194835
Alignment:
| Q |
1 |
caatgtgcttagggcataaaatctaaatgcaagaattttgcttattttatcttcaatatttgctgaggtatgtgattttggcattttatcaataacttct |
100 |
Q |
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| T |
31195009 |
caatgtgcttagggcataaaatctaaatgcaagaattttgcttattttatcttcaatatttgctgaggtatgtgattttggcattttatcaataacttct |
31194910 |
T |
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| Q |
101 |
tcactctttacaccctccaataattgacattttcccctatgatatattaaatcctaaaagaagatatagggtacaa |
176 |
Q |
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| T |
31194909 |
tcactctttac-ccctccaataattgacatttccccctattatatattaaatcctaaaagaagatatagggtacaa |
31194835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 30866421 - 30866682
Alignment:
| Q |
8 |
cttagggcataaaatctaaatgcaagaattttgcttattttatcttcaatatttgctgaggtatgtg------attttg---------gcattttatcaa |
92 |
Q |
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| T |
30866421 |
cttagggcataaaatctaaatgcaagaattttgcttattttatcttcaaaatttgctgaggtatgtttttggtattttgctccacatagctttctctcag |
30866520 |
T |
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| Q |
93 |
taacttcttcactctttacaccctccaataattgacattttcccctatgatatattaaatcctaaaagaagatatagggtacaaagagttaattatgaat |
192 |
Q |
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| T |
30866521 |
taacatcttcacaccttac-ccctccaataattgacattttcccctatgatatattaaatcctaaaagaagatatagggtacaa-gagttaattatgaat |
30866618 |
T |
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| Q |
193 |
gaaaagaaatagatgatccattgtgattgctgctcatattttattttagtaaccactacctaag |
256 |
Q |
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| T |
30866619 |
gaaaagaaaaagatgatccattgtgattgctgctcatattttgtttgagtaaccactacctaag |
30866682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 31194522 - 31194453
Alignment:
| Q |
176 |
aagagttaattatgaatgaaaagaaata-gatgatccattgtgattgctgctcatattttattttagtaa |
244 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31194522 |
aagagttaattatgaatgaaaagaaaaaagatgatccattgtgattgctgctcatattttattttagtaa |
31194453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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