View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_high_18 (Length: 307)
Name: NF3310_high_18
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_18 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 26357871 - 26357565
Alignment:
| Q |
1 |
tgtttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgtt----------g |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
26357871 |
tgtttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcttacatgtttgatatcagtgtttatcagtgttg |
26357772 |
T |
|
| Q |
91 |
tacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
26357771 |
tacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatctttaggtattgcat |
26357672 |
T |
|
| Q |
191 |
cagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357671 |
cagttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttg |
26357572 |
T |
|
| Q |
291 |
ctctctg |
297 |
Q |
| |
|
||||||| |
|
|
| T |
26357571 |
ctctctg |
26357565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 51759689 - 51759446
Alignment:
| Q |
1 |
tgtttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaac |
100 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||| ||||| ||| |||| |||||||||||| ||||||| |||||||||| ||||||||||||| |
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|
| T |
51759689 |
tgtttctggtatatattcaaaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaac |
51759590 |
T |
|
| Q |
101 |
ttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttag |
200 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| |
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|
| T |
51759589 |
ttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagtgttagtaatagcttgttgaatctttagatactgcatcagtt----- |
51759495 |
T |
|
| Q |
201 |
ttcttactcttggttatgtataattgttgctcaatttctgttccctgctca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
51759494 |
--cttactcttggttatgtataattgttgcttaatttatgttcccagctca |
51759446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 6685089 - 6684843
Alignment:
| Q |
1 |
tgtttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaac |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||| ||||||||||||| |
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|
| T |
6685089 |
tgtttttggcatatattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaac |
6684990 |
T |
|
| Q |
101 |
ttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttag |
200 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||| |
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|
| T |
6684989 |
ttttgatttggaatattagtataacagttggatgctgcccttttgatttagagtgttaggtatagcttgttgaatctttaggtactgcatcagtt----- |
6684895 |
T |
|
| Q |
201 |
ttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
6684894 |
--cttactcttggttatgtataattgttgcataatttatgttcccagctcaact |
6684843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 30822062 - 30821828
Alignment:
| Q |
3 |
tttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaactt |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
30822062 |
tttctggcatatattcaaaattgtcttctcaatccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaactt |
30821963 |
T |
|
| Q |
103 |
ttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagtt |
202 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
30821962 |
ttgatttggaatgttagtataacagttggatgctgcccttttgattaagagtgttagtaatagcttgttgaatatttaggtactgaatcagtt------- |
30821870 |
T |
|
| Q |
203 |
cttactcttggttatgtataattgttgctcaatttctgttcc |
244 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
30821869 |
cttactcttggttatttataattgttgcttaatttctgttcc |
30821828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 30812796 - 30812556
Alignment:
| Q |
7 |
tggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaacttttga |
106 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||||| |
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|
| T |
30812796 |
tggcatttattcaaaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatattagttttgtacaaccaatttttga |
30812697 |
T |
|
| Q |
107 |
tttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttctta |
206 |
Q |
| |
|
|||| |||||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||| || ||||||| |||| |
|
|
| T |
30812696 |
tttgaaatgttagtataacagttggatgttgccctgttgattaagagtgttagtaatagcttgttgaatctttaggtactgaatcagtt-------ctta |
30812604 |
T |
|
| Q |
207 |
ctcttggttatgtataattgttgctcaatttctgttccctgctcaact |
254 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
30812603 |
ctcttggttatttataattgttgcttaatttatgttcccagctcaact |
30812556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 41 - 254
Target Start/End: Complemental strand, 12592727 - 12592521
Alignment:
| Q |
41 |
caacacagtgatttggatattactagcatacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctaccc |
140 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
12592727 |
caacatagttatttggatattactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgccc |
12592628 |
T |
|
| Q |
141 |
ttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaatttctg |
240 |
Q |
| |
|
||||||||| | |||| |||||||||| ||||||||||||||| | |||| | ||||| ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
12592627 |
ttttgatttagtttgttagtaatagcttattgaatctttaggtactacatc-------aattctttctcttggttatgtataattattgcttaatttctg |
12592535 |
T |
|
| Q |
241 |
ttccctgctcaact |
254 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
12592534 |
ttcccagctcaact |
12592521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 254
Target Start/End: Complemental strand, 27810798 - 27810568
Alignment:
| Q |
3 |
tttctggcatatatttgaaattgtcttctcagtccatccaacacagtgatttggatattacta--gcatacatgtttgatatcagtgttgtacaaccaac |
100 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||| ||||| ||| ||||||||||||||| || ||||||| |||||||||| ||||||||||||| |
|
|
| T |
27810798 |
tttctggcttatattcaaaattgtattctcagtccattcaacatagttatttggatattactatagcttacatgtatgatatcagttttgtacaaccaac |
27810699 |
T |
|
| Q |
101 |
ttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttag |
200 |
Q |
| |
|
||||||||||| |||||| || |||||||||||| ||||||| |||||||||||||||||||||||||| |||||| || |
|
|
| T |
27810698 |
ttttgatttggaatgtta----------------ctgcccttttgatttagagtgttagtaatagcttgttgaatctttaggtactgcatc-------ag |
27810622 |
T |
|
| Q |
201 |
ttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
254 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
27810621 |
ttcttactcttggttatttataattgttgcttaatttctgttcccatctcaact |
27810568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 2942525 - 2942576
Alignment:
| Q |
203 |
cttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaact |
2942576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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