View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_24 (Length: 268)
Name: NF3310_high_24
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 34137589 - 34137838
Alignment:
| Q |
1 |
acttctcccatgatgatgtttttatgtttgctg---gtttggtttcttgcgtttctcttgttttttaagtgacnnnnnnntacatacatttgtaggaaaa |
97 |
Q |
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| T |
34137589 |
acttctcccatgatgatgtttttctgtttgctactagtttggtttcttgcgtttctcttgttttttaagtgacaaaa----aaataaatttgtaggaaaa |
34137684 |
T |
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| Q |
98 |
tttgcaagagcaaaaccagtattattgggttatatatatacattgaatctagactagttttagagcatatatgtgacttttctctcgtgcttattgtgaa |
197 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137685 |
tttgcaagagcaaaaccagtattatcgagttatatatatacattgaatctagactagttttagagcatatatgtgacttttctctcgtgcttattgtgaa |
34137784 |
T |
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| Q |
198 |
aaatatgaacaaaaactaattttattacttacttcct-aaaaagaatattaact |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34137785 |
aaatatgaacaaaaactaattttattacttacttcctaaaaaagaatattaact |
34137838 |
T |
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