View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_25 (Length: 262)
Name: NF3310_high_25
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42570414 - 42570662
Alignment:
| Q |
1 |
tcgaattttttatctctaattccagttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggctt |
100 |
Q |
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| T |
42570414 |
tcgaattttttatctctaattccagttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggctt |
42570513 |
T |
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| Q |
101 |
gcttcttatggaact---gataatcccatttatgctgcccatgagctggctctatccataatccgaagtgaaatccgtaaaattactttagatgatttca |
197 |
Q |
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| T |
42570514 |
gcttcttatggaactgaggataatcccatttatgctgcccatgagctggctctatccacaatccgaagtgaaatccgtaaaattactttagatgatttca |
42570613 |
T |
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| Q |
198 |
acaaggaaaagaacgatacactgtctnnnnnnnttatggtgagtttagt |
246 |
Q |
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| T |
42570614 |
acaaggaaaagaacgatacactgcctaagaaaattatggtgagtttagt |
42570662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 42577606 - 42577848
Alignment:
| Q |
7 |
tttttatctctaattccagttaatactttttaggtgcttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggcttgcttct |
106 |
Q |
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| T |
42577606 |
tttttgtctctgatttcggttaatactttttaggtgcttcttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaagcttgcttcc |
42577705 |
T |
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| Q |
107 |
tatggaact---gataatcccatttatgctgcccatgagctggctctatccataatccgaagtgaaatccgtaaaattactttagatgatttcaacaagg |
203 |
Q |
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| T |
42577706 |
tatggaactgaggataatcccctttatgctatccatgagctggctcaagccacaatccgtgttgaaatccgtaaaattactttagatgatttcaacaagg |
42577805 |
T |
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| Q |
204 |
aaaagaacgatacactgtctnnnnnnnttatggtgagtttagt |
246 |
Q |
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| T |
42577806 |
aaaagaacgatacactgcctaaaaagattatggtgagtttagt |
42577848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 42572825 - 42572894
Alignment:
| Q |
43 |
cttgttgatttgttttgtaactgtttttgttggagtgcagattgtggatcctaggcttgcttcttatgga |
112 |
Q |
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| T |
42572825 |
cttgttggtttgtttagtaactgtttttactggagtgcagattgtggatcctaagcttgcttcttatgga |
42572894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 42594366 - 42594399
Alignment:
| Q |
77 |
gtgcagattgtggatcctaggcttgcttcttatg |
110 |
Q |
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| T |
42594366 |
gtgcagattgtggatcctaagcttgcttcttatg |
42594399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 27871125 - 27871058
Alignment:
| Q |
67 |
ttttgttggagtgcagattgtggatcctaggcttgcttcttatggaactgataatcccatttatgctg |
134 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||| |
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| T |
27871125 |
tttttttggagtgcagattgtggatcctaaacttgcttcttatggggttgagaatcccctttatgctg |
27871058 |
T |
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