View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_27 (Length: 261)
Name: NF3310_high_27
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 34136324 - 34136079
Alignment:
| Q |
1 |
ttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctcat--acacaaccaaagattgatcagtgtttctgaaat |
98 |
Q |
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| T |
34136324 |
ttcaaatttatcattataagctacagtagagaaagatagtttaataaatgtatcacttagctcatttacacaaccaaagattgatcagtgtttctgaaat |
34136225 |
T |
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| Q |
99 |
gagtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccgtt |
198 |
Q |
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| T |
34136224 |
gagtgagtggctgcaatcaaatttgctagtattgaaattactagtgtgcattatgtaagaattttatctcagaataaaagaaaatttagttattaccgtt |
34136125 |
T |
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| Q |
199 |
cattatgtttgatcttcaaatattgaattgatataggctttcgaatt |
245 |
Q |
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| T |
34136124 |
cattatgtttgatc-tcaaatattgaattgatataggccttcaaatt |
34136079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34139276 - 34139049
Alignment:
| Q |
1 |
ttcaaatttatcattata--agctacagtagagaaagatagtttaataaatgtatcacttagctca--tacacaaccaaagattgatcagtgtttctgaa |
96 |
Q |
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| T |
34139276 |
ttcaaatttatcattatataagctaccttagagaaagatattttaataaatgtatgacttagctcatgtaaacaaccaaagattgatcggtgtttctaaa |
34139177 |
T |
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| Q |
97 |
atgagtgagtggctgcaatcaaatttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccg |
196 |
Q |
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| T |
34139176 |
atgagcaactggctacaatcaaattt----gtattagaattact-gggtgcattatgtatgcaatttatctcataataaaagacaataaagttaataccg |
34139082 |
T |
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| Q |
197 |
ttcattatgtttgatcttcaaatattgaattgat |
230 |
Q |
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| T |
34139081 |
ttcattatgtttgatc-tcaaaaattgatttgat |
34139049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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