View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_29 (Length: 250)
Name: NF3310_high_29
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_29 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 21868544 - 21868309
Alignment:
| Q |
15 |
tatcactaagtggcttcaaatgtgtggagacaacattctttggagccacattttgcatctgagtagtgtttagcatgaaaccattttcagtactttgttg |
114 |
Q |
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| T |
21868544 |
tatcactaagtggcttcaaatgtgtggagacaacattctttggagccacattttgcatctgagtagtgtttagcatgaaaccattttcagttctttgttg |
21868445 |
T |
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| Q |
115 |
cattttctttagcatgctaattttgtgattacaagcttgaatcttgccatctagaataccaatgaaagttttgagctgttccccatccatgttcatgaag |
214 |
Q |
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| T |
21868444 |
cattttctttagcatgctaattttgtgattacaagcttgaatcttggcatctagaataccaatgaaagttttgagttgttccccatccatgttcatgaag |
21868345 |
T |
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| Q |
215 |
catgggtgccaagttggatacattttcatcacaatc |
250 |
Q |
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| T |
21868344 |
catgggtgccaagttggatacattttcatcacaatc |
21868309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 106 - 245
Target Start/End: Complemental strand, 21876326 - 21876187
Alignment:
| Q |
106 |
actttgttgcattttctttagcatgctaattttgtgattacaagcttgaatcttgccatctagaataccaatgaaagttttgagctgttccccatccatg |
205 |
Q |
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| T |
21876326 |
actttcttgcattttcttcagcatgctaatccttttcttgcaagcttgaatcttgccacctagaatgccaatgaaagttttgagttgttccccattcatg |
21876227 |
T |
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| Q |
206 |
ttcatgaagcatgggtgccaagttggatacattttcatca |
245 |
Q |
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| T |
21876226 |
ttcatgaagcatgggtgccaagttggatacattttcatca |
21876187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 21819001 - 21819126
Alignment:
| Q |
125 |
agcatgctaattttgtgattacaagcttgaatcttgccatctagaataccaatgaaagttttgagctgttccccatccatgttcatgaagcatgggtgcc |
224 |
Q |
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| T |
21819001 |
agcatgctaattctttgatcacaagcttcaatcttggcatttacaatagcagtgaaggctttgagttgttcaccatccatgttaatgaaacatggatccc |
21819100 |
T |
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| Q |
225 |
aagttggatacattttcatcacaatc |
250 |
Q |
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| T |
21819101 |
aagttggatacttgttcttcacaatc |
21819126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 52000138 - 52000098
Alignment:
| Q |
127 |
catgctaattttgtgattacaagcttgaatcttgccatcta |
167 |
Q |
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| T |
52000138 |
catgttaattttgtgattacaagcttgaatcttggcatcta |
52000098 |
T |
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