View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_31 (Length: 250)
Name: NF3310_high_31
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42570453 - 42570213
Alignment:
| Q |
1 |
cctaaaaagtattaaccggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacatgctgatgttatccttggtgaaagca |
100 |
Q |
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| T |
42570453 |
cctaaaaagtattaactggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacatgctgatgttatccttggtgaaagca |
42570354 |
T |
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| Q |
101 |
ggcaggcgatcaag-atagagggnnnnnnnccatagatcatggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagat |
199 |
Q |
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| T |
42570353 |
ggcaggcgatcaagaatagagggtttttttctatagatcatggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagat |
42570254 |
T |
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| Q |
200 |
ttaaagtattttccatatctctcgatgatatatactctctg |
240 |
Q |
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| T |
42570253 |
ttaaagtattttccatatctctcgatgatatatactgtctg |
42570213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42577639 - 42577398
Alignment:
| Q |
1 |
cctaaaaagtattaaccggaattagagataaaaaattcgatacaccttaacatcaatgcaaccacccacgaacatgctgatgttatccttggtgaaagca |
100 |
Q |
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| T |
42577639 |
cctaaaaagtattaaccgaaatcagagacaaaaa--tcgatagaccttaacatcaatccgaccatctacgaacatgccaatgttatcgttggtgaaagca |
42577542 |
T |
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| Q |
101 |
ggcaggcgatcaagatagagggnnnnnnnccatagatcatggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagatt |
200 |
Q |
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| T |
42577541 |
ctctggctattaagtttaagagtttctatccatagcttatggacgcaagcaattttatcaacaaaagggatcaaaaaatggacgccggtaggaagagttt |
42577442 |
T |
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| Q |
201 |
taaagtattttccatatctctcgatgatatatactctctgctcc |
244 |
Q |
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| T |
42577441 |
taaagtactttccatatcgctcaatgatatacactgtctgctcc |
42577398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 42594189 - 42594084
Alignment:
| Q |
139 |
atggacgcgagcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagatttaaagtattttccatatctctcgatgatatatactctc |
238 |
Q |
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| T |
42594189 |
atggacgcgaacaacttcatcgacaaaaggattcaaaaaatggacgcctgtaggtagagtcttgaagtattttccgaatctctcaacaatatatactgtc |
42594090 |
T |
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| Q |
239 |
tgctcc |
244 |
Q |
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|||||| |
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| T |
42594089 |
tgctcc |
42594084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 42572661 - 42572577
Alignment:
| Q |
148 |
agcaattttatcaacaaaagggttcaaaaaatggatgccggtaggaagagatttaaagtattttccatatctctcgatgatatat |
232 |
Q |
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| T |
42572661 |
agcaattttatcgagaaaaggattcaaaaaaagagagctggcgggaagagttttaaagtattttccatatcgctcaatgatatat |
42572577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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