View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_35 (Length: 241)
Name: NF3310_high_35
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 44380164 - 44379997
Alignment:
| Q |
60 |
cttacagctagaaagaactatttgttacaaaacttgttttatcaagaaaagaatcactctttcatattcatttatacgctccaacacttccctcctttaa |
159 |
Q |
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| T |
44380164 |
cttacagctagaaagaactatttgttacaaaacttgttttatcaagaaaagaatcactctttcatattcatttatacgctccaacacttccctcctttaa |
44380065 |
T |
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| Q |
160 |
tgtttcaatattttcttctgtctctgacattgtttgagtactatgtatagttatgtgaggtggttttt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44380064 |
tgtttcaatattttcttctgtctctgacattgtttgagtactatgtatagttacgtgaggtggttttt |
44379997 |
T |
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