View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_high_37 (Length: 241)
Name: NF3310_high_37
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 49302155 - 49302380
Alignment:
| Q |
1 |
tattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggagaaaaacaaaatgaagaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302155 |
tattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggagaaaaacaaaatgaagaaatt |
49302254 |
T |
|
| Q |
101 |
gttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtgggctttaagaattgggaactgaaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49302255 |
gttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtggtctttaagaattgggaactgaaagg |
49302354 |
T |
|
| Q |
201 |
gtacaaagttcaaattgtactatggt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49302355 |
gtacaaagttcaaattgtactatggt |
49302380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University