View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_high_38 (Length: 239)
Name: NF3310_high_38
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13514927 - 13515148
Alignment:
| Q |
1 |
aatatatttattttaattttattgtcaaatattaataattagttgttacgttagtgtttnnnnnnnttatgttttcgacatcgagtctaagttcatcgta |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
13514927 |
aatatatttattttacttttattgtcaaatattaataattagttgttacgttagtgtttaaaaaaattatgttttcgacatcgagtctaagttca--gta |
13515024 |
T |
|
| Q |
101 |
tgaactatacctagtaatgctgatgatgtttgtgattgtgaaacggatcaatatgcagatggtgagaccaagcatgtgttacacaaagtggagttagtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13515025 |
tgaactatacctagtaatgctgatgatgtttgtgattgtgaaacggatcaatatgcagatggtgagaccaagcatgtgttacacaaagtggagttagtag |
13515124 |
T |
|
| Q |
201 |
atgatgctaacttggcttacaact |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
13515125 |
atgatgctaacttggcttacaact |
13515148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 13501274 - 13501345
Alignment:
| Q |
153 |
atgcagatggtgagaccaagcatgtgttacacaaagtggagttagtagatgatgctaacttggcttacaact |
224 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13501274 |
atgcagatggtgaaaccaagtatgatttacacaaagtggagttagtagatgatgctaactgggcttacaact |
13501345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 13509320 - 13509386
Alignment:
| Q |
154 |
tgcagatggtgagaccaagcatgtgttacacaaagtggagttagtagatgatgctaacttggcttac |
220 |
Q |
| |
|
|||||||||||| || ||| ||||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
13509320 |
tgcagatggtgaaacaaagtatgtgttgcacaaagtggacttagtagatgatgttaacttggcttac |
13509386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 13491964 - 13492068
Alignment:
| Q |
123 |
atgatgtttgtgattgtgaaacggatcaat-atgc--agatggtgagaccaagcatgtgttacacaaagtggagttagtagatgatgctaacttggctta |
219 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||| || |||||| || ||| ||| || ||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
13491964 |
atgatgtttatgattgtgaaacgaatcaattatgcgcaggtggtgaaacaaagtatgatttgcacaaagtggacttagtagatgatgttaactttgctta |
13492063 |
T |
|
| Q |
220 |
caact |
224 |
Q |
| |
|
||||| |
|
|
| T |
13492064 |
caact |
13492068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 13485587 - 13485629
Alignment:
| Q |
182 |
cacaaagtggagttagtagatgatgctaacttggcttacaact |
224 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
13485587 |
cacaaagtggacttagtagatgatgttaactttgcttacaact |
13485629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University