View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_39 (Length: 239)
Name: NF3310_high_39
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 28290080 - 28290190
Alignment:
| Q |
8 |
taatttcagggcgttctcttgctgaatactgttcacataggttagatatttttcatttttgtgaacttataatcaagagtattggtgacttaaaggtcat |
107 |
Q |
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| T |
28290080 |
taatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacatttttgtgaacttctaatcaagagtgttggtgacttaaaggtcat |
28290179 |
T |
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| Q |
108 |
aaaatgtttgt |
118 |
Q |
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| T |
28290180 |
gatatgtttgt |
28290190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 28281816 - 28281928
Alignment:
| Q |
8 |
taatttcagggcgttctcttgctgaatactgttcacataggttagatatttttcatttttgtgaacttataatcaagagtattggtgacttaaaggtcat |
107 |
Q |
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| T |
28281816 |
taatttcagggcgttctcttgctgaatgctgttctcacaggttagatattttacatttttgtgaacttttaatcaatagtattggtgacttaaa-gtcat |
28281914 |
T |
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| Q |
108 |
aaaatgtttgtgca |
121 |
Q |
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| T |
28281915 |
aaactatttgtgca |
28281928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 28290241 - 28290331
Alignment:
| Q |
126 |
gtgtattatgtttgtatactagtattttgtaactagctttcaattgaggcaggaagaatgaagataacacaaatgcacatgtaaatatagg |
216 |
Q |
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| T |
28290241 |
gtgtattatgtttgtatactagtattttgtaactagctttcaattcaggtaggaagaatgaagataatttaaattcacatgcaaatatagg |
28290331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 28281966 - 28282056
Alignment:
| Q |
126 |
gtgtattatgtttgtatactagtattttgtaactagctttcaattgaggcaggaagaatgaagataacacaaatgcacatgtaaatatagg |
216 |
Q |
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| T |
28281966 |
gtgtattatgtttgtatactagtattttgtaactagctttcaattcaggtaggataaatgaaaataatgcaaatgcacatgcaaacatagg |
28282056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 28302996 - 28303051
Alignment:
| Q |
126 |
gtgtattatgtttgtatactagtattttgtaactagctttcaattgaggcaggaag |
181 |
Q |
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| T |
28302996 |
gtgtattatgcttgtatactagtattttgtaactagctttcaattcagtcaggaag |
28303051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 28302891 - 28302941
Alignment:
| Q |
8 |
taatttcagggcgttctcttgctgaatactgttcacataggttagatattt |
58 |
Q |
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| T |
28302891 |
taatttcagggcgttctcttactgaatgctgttctcacaggttagatattt |
28302941 |
T |
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