View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_43 (Length: 237)
Name: NF3310_high_43
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 4563673 - 4563889
Alignment:
| Q |
6 |
agaatcatagttttgaattgtggtatgcaactacaatttcggttgtatatgacacatttaccgtaatataaaagtttgcagtgtaatcgcgatttaaaac |
105 |
Q |
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| T |
4563673 |
agaatcatagttttgaattgtggtatgcaactacaatttcggttatatctaacacatttactgtaatataaaagtttgcattgtaatcgcgatttaaaac |
4563772 |
T |
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| Q |
106 |
tatgaagataatgtgttcggattgatggatagaatgaaagacaaaagaaagagaatggataaaagtgaagagaatacctgaagagattcatttgagagaa |
205 |
Q |
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| T |
4563773 |
tatgaagataatgtcttcggattgatggatagaatgaaagacaaaagaaagagaatggataaaagtgaagagaatacctgaagagattcatttgagagaa |
4563872 |
T |
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| Q |
206 |
ccaagaagaaatgtttt |
222 |
Q |
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| T |
4563873 |
ccaagaagaaatgtttt |
4563889 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 30688397 - 30688368
Alignment:
| Q |
62 |
tttaccgtaatataaaagtttgcagtgtaa |
91 |
Q |
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| T |
30688397 |
tttaccgtaatataaaagtttgcagtgtaa |
30688368 |
T |
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