View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_47 (Length: 206)
Name: NF3310_high_47
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_47 |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 1537716 - 1537896
Alignment:
| Q |
16 |
aatatcacacagcatttgaatttctttggattagcggctcc---tcctcct---ccacctcaggtttctgatcaaagcagtagcaaaaccacttattgtg |
109 |
Q |
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| T |
1537716 |
aatatcacacagcatttgaatttctttggattagcggctcctcctcctcctccaccacctcaagtttctgaccaatgcagtagcaaaaccagttattgtg |
1537815 |
T |
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| Q |
110 |
gttacagtagtggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataact |
190 |
Q |
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| T |
1537816 |
gttacagtactggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataact |
1537896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 10164737 - 10164695
Alignment:
| Q |
143 |
accacaacagtaacagatgacagctattatcccccaaaacaga |
185 |
Q |
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| T |
10164737 |
accacaacagtaacagatgacagctattatcccccaaaacaga |
10164695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 10164766 - 10164724
Alignment:
| Q |
102 |
ttattgtggttacagtagtggtaacaaccaccacaacagtaac |
144 |
Q |
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| T |
10164766 |
ttattgtggctacaatattggtaacaaccaccacaacagtaac |
10164724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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