View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_5 (Length: 528)
Name: NF3310_high_5
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 1900866 - 1901380
Alignment:
| Q |
1 |
attaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggatg |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900866 |
attaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggatg |
1900965 |
T |
|
| Q |
101 |
tgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccgataactagc |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900966 |
tctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccgataactagc |
1901065 |
T |
|
| Q |
201 |
ttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgca-ccttgtatttattttttctaccgctttgatttgttgattcaggagattaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1901066 |
ttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcaggagattaa |
1901165 |
T |
|
| Q |
300 |
aataaaaagtagttttgctagaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcag |
399 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1901166 |
aataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtacgtcataccttgagcagttggtcag |
1901265 |
T |
|
| Q |
400 |
catggcaaggtaactgatcaataatgtgtcattgtattcctgcaaggaaaagaagatactgtaagctaagaaaaactatacgagcatttatgctatatct |
499 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |
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| T |
1901266 |
catggcaaggtaactgatcaataaggtgtcattgtattcctgcaaggaaaagaagatattgtaagctaaaaaaaattatacgagcatttatgctatatct |
1901365 |
T |
|
| Q |
500 |
tactgtgatgttaat |
514 |
Q |
| |
|
||||||||||||||| |
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|
| T |
1901366 |
tactgtgatgttaat |
1901380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 1910312 - 1910826
Alignment:
| Q |
1 |
attaagatgtacgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggatg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910312 |
attaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggatg |
1910411 |
T |
|
| Q |
101 |
tgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccgataactagc |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1910412 |
tctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccgataactagc |
1910511 |
T |
|
| Q |
201 |
ttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgca-ccttgtatttattttttctaccgctttgatttgttgattcaggagattaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1910512 |
ttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcaggagattaa |
1910611 |
T |
|
| Q |
300 |
aataaaaagtagttttgctagaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcag |
399 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1910612 |
aataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtacgtcataccttgagcagttggtcag |
1910711 |
T |
|
| Q |
400 |
catggcaaggtaactgatcaataatgtgtcattgtattcctgcaaggaaaagaagatactgtaagctaagaaaaactatacgagcatttatgctatatct |
499 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
1910712 |
catggcaaggtaactgatcaataaggtgtcattgtattcctgcaaggaaaagaagatattgtaagctaaaaaaaattatacgagcatttatgctatatct |
1910811 |
T |
|
| Q |
500 |
tactgtgatgttaat |
514 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1910812 |
tactgtgatgttaat |
1910826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 66 - 328
Target Start/End: Original strand, 1894058 - 1894322
Alignment:
| Q |
66 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
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|
| T |
1894058 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1894157 |
T |
|
| Q |
166 |
ttaagtggtttggtttttt-cccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgc-accttgtatttattt |
263 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |
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|
| T |
1894158 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1894256 |
T |
|
| Q |
264 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
328 |
Q |
| |
|
|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
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|
| T |
1894257 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1894322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 66 - 328
Target Start/End: Original strand, 1903504 - 1903768
Alignment:
| Q |
66 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
|
|
| T |
1903504 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1903603 |
T |
|
| Q |
166 |
ttaagtggtttggtttttt-cccaccgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgc-accttgtatttattt |
263 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || |
|
|
| T |
1903604 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1903702 |
T |
|
| Q |
264 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
328 |
Q |
| |
|
|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
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|
| T |
1903703 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1903768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 341 - 513
Target Start/End: Original strand, 1894363 - 1894535
Alignment:
| Q |
341 |
aaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactgatcaataatgtgtcattgtattcct |
440 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1894363 |
aaaagaaaacaaacaaaggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactgatcaataaggtgtcattgtattcct |
1894462 |
T |
|
| Q |
441 |
gcaaggaaaagaagatactgtaagctaagaaaaactatacgagcatttatgctatatcttactgtgatgttaa |
513 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
1894463 |
gcaagggaaagaagatattgtaagctaaaaaaaattatacgagcctttatgctatattttactgtgatattaa |
1894535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 341 - 513
Target Start/End: Original strand, 1903809 - 1903981
Alignment:
| Q |
341 |
aaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactgatcaataatgtgtcattgtattcct |
440 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1903809 |
aaaagaaaacaaacaaaggaaacagttactagtatgtcataccttgagcagttggtcagcatggcaaggtaactgatcaataaggtgtcattgtattcct |
1903908 |
T |
|
| Q |
441 |
gcaaggaaaagaagatactgtaagctaagaaaaactatacgagcatttatgctatatcttactgtgatgttaa |
513 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
1903909 |
gcaagggaaagaagatattgtaagctaaaaaaaattatacgagcctttatgctatattttactgtgatattaa |
1903981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 1893980 - 1894016
Alignment:
| Q |
17 |
gaatagaatctactcaaatgactctcccttggcaagt |
53 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1893980 |
gaatagactctactcaaatgactctcccttggcaagt |
1894016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 1903426 - 1903462
Alignment:
| Q |
17 |
gaatagaatctactcaaatgactctcccttggcaagt |
53 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1903426 |
gaatagactctactcaaatgactctcccttggcaagt |
1903462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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