View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_high_8 (Length: 403)
Name: NF3310_high_8
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 26262497 - 26262121
Alignment:
| Q |
17 |
atttggacggtgttaatttgtgccctaaatcaagaaaggtattaaagttaatttttgttttgataagataaaactttaaaatttagaaatgttaaatgca |
116 |
Q |
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| T |
26262497 |
atttggacggtgttaacttgtgccctaaatcaagaaaggtattaaagttaatttttgttttgataagataaaactttaaaatttagaaatgttaaatgca |
26262398 |
T |
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| Q |
117 |
tcatttttnnnnnnnngtttatatgattagttactaaacttgtactcgacaaacacaagttagcatttctttatttatttacatcacacaactctctaaa |
216 |
Q |
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| T |
26262397 |
tcatttttaagaaaaagtttatatgattagttactaaacttgtactcgagaaacacaagttagcatttctttatttatttacatcacacaactctctaaa |
26262298 |
T |
|
| Q |
217 |
ccaacatgacttttttcttttaaattaaaagtaaaagacacgtccaacatagcatgacaaaaattgtagatagttgacccttgaccatttacttcatagt |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26262297 |
ccaacatgacttttttctgttaaattaaaagtaaaagacacgtccaacatagcatgacaaaaattgtagatagttgacccttgaccatttacttcatagt |
26262198 |
T |
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| Q |
317 |
ttgatctttgagtggtgcatatgnnnnnnntttgttctaagaagtcaacctcctaaatagatttagaagattagtct |
393 |
Q |
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| T |
26262197 |
ttgatctttgagtggtgcatatgaaaaaaatttgttctaaaaagtcaacctcctaaatagatttagaagattagtct |
26262121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 19678997 - 19679030
Alignment:
| Q |
91 |
tttaaaatttagaaatgttaaatgcatcattttt |
124 |
Q |
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| T |
19678997 |
tttaaaatttagaagtgttaaatgcatcattttt |
19679030 |
T |
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