View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_low_10 (Length: 369)
Name: NF3310_low_10
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 52289667 - 52289999
Alignment:
| Q |
20 |
cttagtttgaacacttgtttgaagatttgtaatcgacttaggattccaaacgaacatttgttgccaaatctccatgaaagctcgcacaattactccatga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52289667 |
cttagtttgaacacttgtttgaagatttgtaatcgacttaggattccaaacgaacatttgttgccaaatctccatgaaagctcgcacaattactccatga |
52289766 |
T |
|
| Q |
120 |
taatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcggacatttccatctcttctatcatctctaacattgatttct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52289767 |
taatctctagaattcagagccaaaaaacactgcaatagttgctccaagtccttggcttcagacatttccatctcttctatcatctctaacattgatttct |
52289866 |
T |
|
| Q |
220 |
tgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacatgacataaccttcgtttcggttcctct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52289867 |
tgaagtcttcgtaaggatcctttgactttttcaccaaagcaaagctttcttttaccttctcctccattctacttgacataaccttcgtttcggttcctct |
52289966 |
T |
|
| Q |
320 |
tcgattctcttccattctacttgacataacctt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
52289967 |
tcgattctcttccattctacttgacataacctt |
52289999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 52289971 - 52290024
Alignment:
| Q |
276 |
ttctcctccattctacatgacataaccttcgtttcggttcctcttcgattctct |
329 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
52289971 |
ttctcttccattctacttgacataaccttcgtttcttttcctctttgattctct |
52290024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University