View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_11 (Length: 362)
Name: NF3310_low_11
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 43709224 - 43709558
Alignment:
| Q |
17 |
ataaacatgcatgttaatgtagagaaagaggtctatggtatcccatatcctagttcaacattcaaatctatcccattgaagccttcttccatcaacaagt |
116 |
Q |
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| T |
43709224 |
ataaacatgcatattaatgtagagaaagaggtctatggtatcccatatcctagttcaacattcaaatctatcccattgaagccttcttccatcaacaagt |
43709323 |
T |
|
| Q |
117 |
ctcttgctatgttaagatctacctcaagagtagccaattttgtcttaagcctctccatttccaacgctatatcttccgcattctcctttagcatctccat |
216 |
Q |
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| T |
43709324 |
ctcttgctatgttaagatctacctcaagagtagccaattttgtcttaagcctctccatttccaacgctataccttccgcattctccttcagcatctccat |
43709423 |
T |
|
| Q |
217 |
ctgcacagctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccat |
316 |
Q |
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| T |
43709424 |
ctgcacatctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccat |
43709523 |
T |
|
| Q |
317 |
aaaatttgaagatccttgcaagcttgatcattcat |
351 |
Q |
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| T |
43709524 |
aaaatttgaagatccttgcaagcttgatcattcat |
43709558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 43695538 - 43695665
Alignment:
| Q |
224 |
gctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaattt |
323 |
Q |
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| T |
43695538 |
gctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaactt |
43695637 |
T |
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| Q |
324 |
gaagatccttgcaagcttgatcattcat |
351 |
Q |
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| T |
43695638 |
gaagatccttacaagcctggtcattcat |
43695665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 43707701 - 43707834
Alignment:
| Q |
218 |
tgcacagctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccata |
317 |
Q |
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|||||| |||||||||| |||||||||||| ||||||| ||| |||||| |||||||||||| |||||||||| |||| ||||||||||||| ||| |
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| T |
43707701 |
tgcacaactttctccacaaaacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtata |
43707800 |
T |
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| Q |
318 |
aaatttgaagatccttgcaagcttgatcattcat |
351 |
Q |
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||| || | |||||| |||| ||| |||||||| |
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| T |
43707801 |
aaactttagtatccttacaaggttggtcattcat |
43707834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 43691186 - 43691259
Alignment:
| Q |
258 |
attgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatcc |
331 |
Q |
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| T |
43691186 |
attgaacatgatactctagccaagacaaatcaaaaccaaatggctgaagttcctcccaaaaaatttgaagatcc |
43691259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 351
Target Start/End: Original strand, 43696330 - 43696455
Alignment:
| Q |
226 |
tttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttga |
325 |
Q |
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|||||||| |||| |||||||| ||| || ||||||||||| || ||||||| || || ||| |||||| | ||||||||||||| ||||||||| |
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| T |
43696330 |
tttctccaaataacatttcattcctaaggctgattgaacatgaagccctagccatatcaaataaaaaccaaatggcccaagttcctcccagaaaatttga |
43696429 |
T |
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| Q |
326 |
agatccttgcaagcttgatcattcat |
351 |
Q |
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|||||||| |||||| ||||||||| |
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| T |
43696430 |
agatccttacaagctaaatcattcat |
43696455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 15827371 - 15827243
Alignment:
| Q |
223 |
agctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatt |
322 |
Q |
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||||||||||| ||| ||||| |||| ||||||| | |||||||| | |||||||||| | ||||||| |||| || | |||||||||||||||| | |
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| T |
15827371 |
agctttctccatgtatctttttattcctaaagcatagtgaacatgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaact |
15827272 |
T |
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| Q |
323 |
tgaagatccttgcaagcttgatcattcat |
351 |
Q |
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||||||||||| |||||||| |||||||| |
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| T |
15827271 |
tgaagatccttacaagcttgttcattcat |
15827243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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