View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_14 (Length: 331)
Name: NF3310_low_14
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 152 - 314
Target Start/End: Complemental strand, 38701845 - 38701679
Alignment:
| Q |
152 |
cataatagcatgtgattttatcgtcaagctatccttctcactctcccaatcacccatgttggcatt-tttaagggagtaacaatgtttat---attagaa |
247 |
Q |
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| T |
38701845 |
cataatagcatgtgattttatcgtcaagctatccttctcactctcccaatcacccatgttggcattctttaagggagtaacaatgtttattatattagaa |
38701746 |
T |
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| Q |
248 |
aggaaagaaccaggtagaattgtgtaattagaaaccaaagatttaccggtcgattcaaaacagatac |
314 |
Q |
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| T |
38701745 |
aggaaagaaccaggtagaattgtgtaattagaaaccaaagatttatcggtcgattcaaaacagatac |
38701679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 38701949 - 38701846
Alignment:
| Q |
11 |
cagagaaacttgattgttgttctagagtatattgaatacttatgtgatcgagttgctaattacctttatctcattgaatcccaatggtatattttaaaca |
110 |
Q |
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| T |
38701949 |
cagagaaacttgattgctgttctagagtatattgaatacttttgtgatcgagttgctaatcacctttatctcattggatcccaatggtatattttaaaca |
38701850 |
T |
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| Q |
111 |
taaa |
114 |
Q |
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|||| |
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| T |
38701849 |
taaa |
38701846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 38699383 - 38699263
Alignment:
| Q |
82 |
cattgaatcccaatggtatattttaaacataaatattgttcgact-gcttatcattttattggatttgtaccataatagcatgtgattttatcgtcaagc |
180 |
Q |
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| T |
38699383 |
cattgaatcacgaaggtatgttttaaacgtaaatattgttt-actagcttatcatttcattggatttgtatgataa---cgtgtgattttatcatcatgc |
38699288 |
T |
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| Q |
181 |
tatccttctcactctcccaatcacc |
205 |
Q |
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| T |
38699287 |
taaccttctgactctgccaatcacc |
38699263 |
T |
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