View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3310_low_15 (Length: 320)

Name: NF3310_low_15
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3310_low_15
NF3310_low_15
[»] chr3 (16 HSPs)
chr3 (55-305)||(5299518-5299768)
chr3 (55-305)||(5250956-5251206)
chr3 (53-273)||(5268841-5269061)
chr3 (160-305)||(4387935-4388080)
chr3 (125-251)||(6479025-6479151)
chr3 (124-245)||(8455513-8455634)
chr3 (124-250)||(6519206-6519332)
chr3 (124-245)||(6736849-6736970)
chr3 (124-245)||(6553487-6553608)
chr3 (124-245)||(8590588-8590709)
chr3 (11-53)||(5298652-5298694)
chr3 (122-254)||(5281508-5281640)
chr3 (124-189)||(6948128-6948193)
chr3 (11-53)||(5267977-5268019)
chr3 (11-51)||(5250090-5250130)
chr3 (11-53)||(4389009-4389051)
[»] scaffold0425 (1 HSPs)
scaffold0425 (124-245)||(6526-6647)
[»] chr4 (1 HSPs)
chr4 (155-251)||(41068372-41068468)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 55 - 305
Target Start/End: Original strand, 5299518 - 5299768
Alignment:
Q  55 gaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatac 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299518 gaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatac 5299617  T
Q  155 acaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299618 acaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaa 5299717  T
Q  255 cttgaagtttctctagcagtgtatcgtcaagtttgcctcgacgaaaatagt 305  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5299718 cttgaagtttctgtagcagtttatcgtcaagtttgcctcgacgaaaatagt 5299768  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 305
Target Start/End: Original strand, 5250956 - 5251206
Alignment:
Q  55 gaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatac 154  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||   |||||  |  |||||||||||||| || || || ||  | |||||     
T  5250956 gaagtcgaataccttgctagtagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatat 5251055  T
Q  155 acaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaa 254  Q
     ||  ||||||||||||| |||||||||||||||||||   |||||||||||||||  ||||||||||||| |  ||||||||||||||||||||||| |    
T  5251056 gcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtattgcttcatctccgcttcttccaacacatggttgatagaattgagtgtta 5251155  T
Q  255 cttgaagtttctctagcagtgtatcgtcaagtttgcctcgacgaaaatagt 305  Q
     | |||||||||| |||||  || | |||||||||| || ||| |||||||    
T  5251156 ttagaagtttctccagcagattaacatcaagtttgcttctacggaaatagt 5251206  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 53 - 273
Target Start/End: Original strand, 5268841 - 5269061
Alignment:
Q  53 atgaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcat 152  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||   |||||| |  |||||||||||||| || || || ||  | ||||    
T  5268841 atgaagtcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcat 5268940  T
Q  153 acacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgt 252  Q
    |  ||  ||||||||||||| |||||||||||||||||||   ||||||| | |||||  |||| |||||||| |  |||||||||||||||||||||||    
T  5268941 atgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatctcagcttcttccaacacatggttgatagaattgagtgt 5269040  T
Q  253 aacttgaagtttctctagcag 273  Q
     | | ||||||||||||||||    
T  5269041 tattagaagtttctctagcag 5269061  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 305
Target Start/End: Complemental strand, 4388080 - 4387935
Alignment:
Q  160 atgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttga 259  Q
    ||||||||||||| ||||||||||||||||| |   ||||||||| |||||  ||||||||||||| |  ||| ||||||||||||||||||| | | ||    
T  4388080 atgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttcatctccgcttcttccaacacacggttgatagaattgagtgttattaga 4387981  T
Q  260 agtttctctagcagtgtatcgtcaagtttgcctcgacgaaaatagt 305  Q
    ||||||||||||||| |||| |||||||||| || |||||||||||    
T  4387980 agtttctctagcagtttatcatcaagtttgcttccacgaaaatagt 4387935  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 6479151 - 6479025
Alignment:
Q  125 atctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttctt 224  Q
    |||||||| || ||||| ||||||||||| |||||||||||||| | | |||||||||||||||| |||  | ||||||| |||||| |||| |||||||    
T  6479151 atctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgcttctt 6479052  T
Q  225 cgagtacatggttgatagaattgagtg 251  Q
    | || ||||||||||||||||||||||    
T  6479051 ccagcacatggttgatagaattgagtg 6479025  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 8455513 - 8455634
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 223  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  8455513 aatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 8455612  T
Q  224 tcgagtacatggttgatagaat 245  Q
    || ||||| |||||||||||||    
T  8455613 tctagtacttggttgatagaat 8455634  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 6519332 - 6519206
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 223  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||   ||| ||||||    
T  6519332 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttcagctctgcttct 6519233  T
Q  224 tcgagtacatggttgatagaattgagt 250  Q
    || || |||||||||||||||||||||    
T  6519232 tcaagcacatggttgatagaattgagt 6519206  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 6736849 - 6736970
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 223  Q
    |||||||||||| ||||| ||||||||||| | |||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  6736849 aatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 6736948  T
Q  224 tcgagtacatggttgatagaat 245  Q
    || ||||| |||||||||||||    
T  6736949 tctagtacttggttgatagaat 6736970  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 6553608 - 6553487
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 223  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  6553608 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 6553509  T
Q  224 tcgagtacatggttgatagaat 245  Q
    || ||||| |||||||||||||    
T  6553508 tctagtacttggttgatagaat 6553487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 8590588 - 8590709
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 223  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  |||| |||| |||||| |||| |||||     
T  8590588 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgcttcg 8590687  T
Q  224 tcgagtacatggttgatagaat 245  Q
    || ||||| | |||||||||||    
T  8590688 tccagtacttcgttgatagaat 8590709  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 5298652 - 5298694
Alignment:
Q  11 cacagatctgtctccaatatcttaacccattcacgttgagaga 53  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5298652 cacagatctgtctccaatatcttaacccattcacgttgagaga 5298694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 5281508 - 5281640
Alignment:
Q  122 gcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgc-tttgtctccgct 220  Q
    ||||||||||| |||| ||| ||||| ||||| ||| |||||||||||||| ||||||||||||| || |||| ||||| ||| ||| ||||| || |||    
T  5281508 gcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctttacatatgtgcttttgtactgcatttgt-tctgct 5281606  T
Q  221 tcttcgagtacatggttgatagaattgagtgtaa 254  Q
    ||||| || || || || |||||||| |||||||    
T  5281607 tcttccagcacttgatttatagaattaagtgtaa 5281640  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 6948128 - 6948193
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcac 189  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||||    
T  6948128 aatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttcttcac 6948193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 5267977 - 5268019
Alignment:
Q  11 cacagatctgtctccaatatcttaacccattcacgttgagaga 53  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  5267977 cacatatctgtctccaatatcttaacccattcatgttgagaga 5268019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 5250090 - 5250130
Alignment:
Q  11 cacagatctgtctccaatatcttaacccattcacgttgaga 51  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  5250090 cacatatctgtctccaatatcttaacccaatcacgttgaga 5250130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 4389051 - 4389009
Alignment:
Q  11 cacagatctgtctccaatatcttaacccattcacgttgagaga 53  Q
    |||| ||| |||||||||||| |||||||||||||||||||||    
T  4389051 cacatatcggtctccaatatcctaacccattcacgttgagaga 4389009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 6647 - 6526
Alignment:
Q  124 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttct 223  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| |||| |||||     
T  6647 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcg 6548  T
Q  224 tcgagtacatggttgatagaat 245  Q
    || ||||| |||||||||||||    
T  6547 tctagtacttggttgatagaat 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 41068468 - 41068372
Alignment:
Q  155 acaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtg 251  Q
    |||||||||||||| ||| ||||||| |||||||| |||  ||||||||| || | |  ||| |||||||| |  ||||||||||||||||||||||    
T  41068468 acaacatgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgcttcttccaacacatggttgatagaattgagtg 41068372  T

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