View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_low_16 (Length: 319)
Name: NF3310_low_16
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 40283582 - 40283301
Alignment:
| Q |
11 |
catcatcattcatacaatacctcaaagtccccaacaacgatcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40283582 |
catcatcattcatacaatacctcaaagtccccaacaac--tcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagacc |
40283485 |
T |
|
| Q |
111 |
actgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacattaattacttcgccaaaaaaggagctaacgatcctgaaacgattccct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40283484 |
actgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacattaattacttcgccaaaaaaggagctaa-----------cgattccct |
40283396 |
T |
|
| Q |
211 |
cttaatgcttcagtcctgcacttcaccatacaataggatcagcagtttcaagaaatatacaccaatgtttttggttgcagcaaatgataattctg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40283395 |
cttaatgcttcagtcctgcacttcaccatacaatagaatcagcagtttcaagaaatatacaccaatgtttttggttgcagcaaatgataattctg |
40283301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University