View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_20 (Length: 302)
Name: NF3310_low_20
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 20141406 - 20141191
Alignment:
| Q |
1 |
ttatttgaacaccgctttatgttcctgttgtgttcgttctaacaattttgtggtttcttagagctgtattcttaaaaaatgttatcagaattaacagatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141406 |
ttatttgaacaccgctttatgttcctgttgtgttcgttctaacaattttgtggtttcttagagctgtattcttaaaaaatgttatcagaattaacagatg |
20141307 |
T |
|
| Q |
101 |
atataattctgaagattttatggaaggttgaagaagacccacgtgattgggctcgtctttcttgtgtctccacaaaactcaattctctaattcatgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141306 |
atataattctgaagattttatggaaggttgaagaagacccacgtgattgggctcgtctttcttgtgtctccacaaaactcaattctctaattcatgattt |
20141207 |
T |
|
| Q |
201 |
ctgttggaagaacaaa |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
20141206 |
ctgttggaagaacaaa |
20141191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44318821 - 44318606
Alignment:
| Q |
1 |
ttatttgaacaccgctttatgttcctgttgtgttcgttctaacaattttgtggtttcttagagctgtattcttaaaaaatgttatcagaattaacagatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318821 |
ttatttgaacaccgctttatgttcctgttgtgttcgttctaacaattttgtggtttcttagagctgtattcttaaaaaatgttatcagaattaacagatg |
44318722 |
T |
|
| Q |
101 |
atataattctgaagattttatggaaggttgaagaagacccacgtgattgggctcgtctttcttgtgtctccacaaaactcaattctctaattcatgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318721 |
atataattctgaagattttatggaaggttgaagaagacccacgtgattgggctcgtctttcttgtgtctccacaaaactcaattctctaattcatgattt |
44318622 |
T |
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| Q |
201 |
ctgttggaagaacaaa |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
44318621 |
ctgttggaagaacaaa |
44318606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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