View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3310_low_21 (Length: 298)

Name: NF3310_low_21
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3310_low_21
NF3310_low_21
[»] chr4 (28 HSPs)
chr4 (11-230)||(2348600-2348818)
chr4 (180-251)||(2828432-2828503)
chr4 (181-251)||(35997788-35997858)
chr4 (181-251)||(42879275-42879345)
chr4 (181-251)||(44992808-44992878)
chr4 (180-251)||(2350561-2350632)
chr4 (181-251)||(10372760-10372830)
chr4 (181-251)||(39085173-39085243)
chr4 (181-251)||(44558547-44558617)
chr4 (181-251)||(44792934-44793004)
chr4 (181-249)||(10762581-10762649)
chr4 (180-251)||(10371056-10371127)
chr4 (180-251)||(43778388-43778459)
chr4 (180-251)||(47942767-47942838)
chr4 (181-251)||(39923028-39923098)
chr4 (178-251)||(4520472-4520545)
chr4 (181-249)||(10767973-10768041)
chr4 (178-229)||(25995155-25995206)
chr4 (180-251)||(44556619-44556690)
chr4 (180-251)||(44794814-44794885)
chr4 (181-251)||(47941811-47941881)
chr4 (180-251)||(230435-230506)
chr4 (181-228)||(39083639-39083686)
chr4 (181-228)||(39921494-39921541)
chr4 (182-228)||(6999344-6999390)
chr4 (182-228)||(39189383-39189429)
chr4 (180-228)||(5486096-5486144)
chr4 (180-228)||(42880832-42880880)
[»] chr2 (23 HSPs)
chr2 (11-119)||(97875-97983)
chr2 (181-251)||(41163-41233)
chr2 (19-118)||(6397862-6397964)
chr2 (180-251)||(11021532-11021603)
chr2 (181-251)||(15373909-15373979)
chr2 (181-251)||(28248196-28248266)
chr2 (180-251)||(33192-33263)
chr2 (180-251)||(41708451-41708522)
chr2 (180-251)||(42880832-42880903)
chr2 (179-251)||(29909714-29909786)
chr2 (179-251)||(361443-361515)
chr2 (179-251)||(41706537-41706609)
chr2 (189-251)||(39564-39626)
chr2 (181-251)||(15372499-15372569)
chr2 (181-251)||(37418790-37418860)
chr2 (179-251)||(37417271-37417343)
chr2 (181-251)||(39451-39521)
chr2 (181-251)||(42003511-42003581)
chr2 (179-251)||(92401-92472)
chr2 (174-210)||(7744036-7744072)
chr2 (180-234)||(11315406-11315460)
chr2 (176-210)||(17946089-17946123)
chr2 (181-251)||(42001610-42001680)
[»] chr6 (14 HSPs)
chr6 (169-251)||(30639599-30639681)
chr6 (181-251)||(35174391-35174461)
chr6 (181-249)||(29077328-29077396)
chr6 (181-251)||(4641355-4641425)
chr6 (181-249)||(29112300-29112368)
chr6 (192-251)||(3018486-3018545)
chr6 (181-251)||(17950561-17950631)
chr6 (179-251)||(4646237-4646309)
chr6 (181-249)||(29114799-29114867)
chr6 (181-251)||(2968139-2968209)
chr6 (181-228)||(17952119-17952166)
chr6 (181-228)||(35175940-35175987)
chr6 (181-225)||(3018543-3018587)
chr6 (182-254)||(31210458-31210530)
[»] chr7 (30 HSPs)
chr7 (183-251)||(46810707-46810775)
chr7 (181-251)||(4321038-4321108)
chr7 (181-251)||(8421416-8421486)
chr7 (181-251)||(30108565-30108635)
chr7 (181-251)||(35342425-35342495)
chr7 (181-251)||(46994660-46994730)
chr7 (186-251)||(36762701-36762766)
chr7 (181-251)||(8423335-8423405)
chr7 (182-251)||(3690151-3690220)
chr7 (182-251)||(36756904-36756973)
chr7 (182-251)||(36766428-36766497)
chr7 (178-251)||(45465205-45465278)
chr7 (181-251)||(46996756-46996826)
chr7 (181-251)||(47341740-47341810)
chr7 (178-251)||(40785569-40785642)
chr7 (179-251)||(33775406-33775478)
chr7 (179-251)||(35344344-35344416)
chr7 (181-251)||(23955306-23955376)
chr7 (181-251)||(38613535-38613605)
chr7 (179-255)||(38614961-38615037)
chr7 (181-228)||(34784067-34784114)
chr7 (181-251)||(33038851-33038921)
chr7 (186-251)||(47339781-47339846)
chr7 (180-240)||(34692780-34692840)
chr7 (179-251)||(46812636-46812708)
chr7 (181-228)||(45463670-45463717)
chr7 (181-251)||(27955370-27955440)
chr7 (182-228)||(30109743-30109789)
chr7 (181-251)||(38614813-38614883)
chr7 (191-251)||(13169702-13169762)
[»] chr5 (20 HSPs)
chr5 (181-251)||(40330536-40330606)
chr5 (181-251)||(32089946-32090016)
chr5 (181-251)||(32835876-32835946)
chr5 (181-251)||(42619289-42619359)
chr5 (181-251)||(33257781-33257851)
chr5 (181-251)||(18726565-18726635)
chr5 (181-251)||(35291048-35291118)
chr5 (181-251)||(38596868-38596938)
chr5 (179-251)||(1344835-1344907)
chr5 (180-251)||(18728656-18728727)
chr5 (180-251)||(35395332-35395403)
chr5 (192-251)||(38176643-38176702)
chr5 (192-251)||(38203867-38203926)
chr5 (179-251)||(24232149-24232222)
chr5 (180-246)||(24498093-24498159)
chr5 (181-251)||(32087514-32087584)
chr5 (181-251)||(38178147-38178217)
chr5 (181-251)||(38205371-38205441)
chr5 (181-251)||(43318114-43318184)
chr5 (181-210)||(27350596-27350625)
[»] chr1 (24 HSPs)
chr1 (181-251)||(11152545-11152615)
chr1 (181-251)||(5784888-5784958)
chr1 (181-251)||(31803721-31803791)
chr1 (181-251)||(35478087-35478157)
chr1 (181-251)||(45379085-45379155)
chr1 (181-251)||(27952521-27952591)
chr1 (181-251)||(35480029-35480099)
chr1 (181-251)||(18180500-18180570)
chr1 (181-251)||(44159315-44159385)
chr1 (182-251)||(46636766-46636835)
chr1 (181-249)||(47269512-47269580)
chr1 (180-251)||(33685302-33685373)
chr1 (181-251)||(33679259-33679329)
chr1 (185-249)||(36894826-36894890)
chr1 (181-249)||(47264124-47264192)
chr1 (180-251)||(42134481-42134552)
chr1 (181-251)||(27940608-27940678)
chr1 (181-251)||(46638861-46638931)
chr1 (182-251)||(6577126-6577195)
chr1 (180-251)||(44157432-44157503)
chr1 (181-251)||(18183997-18184067)
chr1 (181-251)||(36895564-36895634)
chr1 (181-251)||(42136265-42136335)
chr1 (181-210)||(51123617-51123646)
[»] chr8 (30 HSPs)
chr8 (181-251)||(31823497-31823567)
chr8 (181-251)||(33748332-33748402)
chr8 (181-251)||(25373643-25373713)
chr8 (181-251)||(32824292-32824362)
chr8 (181-251)||(31199485-31199555)
chr8 (181-251)||(31201197-31201267)
chr8 (181-251)||(40019156-40019226)
chr8 (186-250)||(461181-461245)
chr8 (182-249)||(38881429-38881496)
chr8 (181-251)||(24526896-24526966)
chr8 (179-251)||(8654498-8654570)
chr8 (189-240)||(28433781-28433832)
chr8 (180-251)||(42894775-42894846)
chr8 (181-251)||(25707322-25707392)
chr8 (181-251)||(37526077-37526147)
chr8 (181-251)||(42897828-42897898)
chr8 (181-242)||(32822361-32822422)
chr8 (180-251)||(462424-462495)
chr8 (181-228)||(9184383-9184430)
chr8 (181-228)||(23811609-23811656)
chr8 (180-251)||(33160202-33160273)
chr8 (181-228)||(38882874-38882921)
chr8 (181-251)||(9186666-9186736)
chr8 (181-251)||(31821418-31821488)
chr8 (180-210)||(44620731-44620761)
chr8 (179-251)||(5075366-5075438)
chr8 (177-221)||(9876613-9876657)
chr8 (179-251)||(11031427-11031499)
chr8 (186-226)||(28432241-28432281)
chr8 (179-251)||(33368757-33368829)
[»] chr3 (32 HSPs)
chr3 (181-251)||(33111841-33111911)
chr3 (19-104)||(38113477-38113565)
chr3 (181-251)||(48635394-48635464)
chr3 (181-251)||(51454304-51454374)
chr3 (181-249)||(40508493-40508561)
chr3 (19-118)||(45035388-45035490)
chr3 (179-251)||(45897048-45897120)
chr3 (181-251)||(40508965-40509035)
chr3 (178-251)||(18428746-18428819)
chr3 (180-249)||(41021059-41021128)
chr3 (181-251)||(23774152-23774222)
chr3 (179-251)||(23887196-23887268)
chr3 (181-251)||(1847666-1847736)
chr3 (181-251)||(2977383-2977453)
chr3 (181-251)||(23888826-23888896)
chr3 (181-251)||(33850982-33851052)
chr3 (179-249)||(40998513-40998583)
chr3 (181-251)||(48633877-48633947)
chr3 (184-253)||(45255486-45255555)
chr3 (181-237)||(26447723-26447779)
chr3 (196-251)||(24381759-24381814)
chr3 (181-240)||(40963430-40963489)
chr3 (181-251)||(18430325-18430395)
chr3 (181-251)||(31887506-31887576)
chr3 (181-251)||(45898402-45898472)
chr3 (179-228)||(41944574-41944623)
chr3 (179-243)||(45257282-45257346)
chr3 (180-251)||(2975459-2975530)
chr3 (183-242)||(23775676-23775735)
chr3 (181-251)||(33113234-33113304)
chr3 (183-251)||(33852724-33852792)
chr3 (182-210)||(49494477-49494505)
[»] scaffold0477 (1 HSPs)
scaffold0477 (181-251)||(6688-6758)
[»] scaffold0006 (1 HSPs)
scaffold0006 (179-210)||(38340-38371)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 2348600 - 2348818
Alignment:
Q  11 cacagatttgttggttatggtgatggataaatgagatgttggtttcatgaagctgcagttataatttcatggtgaagaaggttggttttggagagagaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  2348600 cacagatttgttggttatggtgatggataaatgagatgttggtttcatgaagctgtagttataatttcatggtgaagaaggttgcttttggagagagaac 2348699  T
Q  111 gggactgttatggtgaagaagcggcgtttaactcattaattaattttaaatttatggaattattattgaagagtgaatcatcaacttcgtccctgaattt 210  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  2348700 gggactgttatggtgaagaagcggcg-ttaactcattaattaattttaaatttatggaattattattgaagagtaaatcatcaacttcgtcgctgaattt 2348798  T
Q  211 tcacggatcggccaaatttg 230  Q
    |||| | |||||||||||||    
T  2348799 tcacaggtcggccaaatttg 2348818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 2828503 - 2828432
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||| | || |||||||| ||||| |||||||||||||||||||    
T  2828503 agagtgaatcatcaacttcgtccctgaatttttatgggtcggccaactttgtccctcaattatgcgaaatat 2828432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 35997858 - 35997788
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||  |||||||    
T  35997858 gagtgaatcatcaactttgtccctgaattttcacgggtcggccaaattcgttcctcaattataagaaatat 35997788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 42879275 - 42879345
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||    
T  42879275 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 42879345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 44992808 - 44992878
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||    
T  44992808 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 44992878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 2350632 - 2350561
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| || ||||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  2350632 agagtgaaccatcaatttagtccctgaattttcatgggtcggccaaatttgtccctcaattatgcgaaatat 2350561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 10372830 - 10372760
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  10372830 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaatat 10372760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 39085243 - 39085173
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||| ||| || || |||||||||||||||||||    
T  39085243 gagtgaatcatcaacttcgtccctgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatat 39085173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 44558617 - 44558547
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||||  | |||||||||||||||||||    
T  44558617 gagtgaaccatcaacttcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatat 44558547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 44792934 - 44793004
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||||||| || |||||||||||||||||||    
T  44792934 gagttaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatat 44793004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 10762581 - 10762649
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  10762581 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaat 10762649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 10371056 - 10371127
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| ||||||||| |||||||||||||||||  ||||| ||||| || |||||||||||||||||||    
T  10371056 agagtgaaccatcaacttagtccctgaattttcacgcgtcggctaaattagtccctcaattatgcgaaatat 10371127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 43778388 - 43778459
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||| |||||||| |||| |||| ||| || || |||||||||||||||||||    
T  43778388 agagtgaatcatcaacttcgtccttgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatat 43778459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 47942838 - 47942767
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||| || | |||||| |||||| |||| |||||| || |||||||||||||||||||    
T  47942838 agagtgaatcatcaacttagttcatgaattatcacgggtcggtcaaattcgtccctcaattatgcgaaatat 47942767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 39923098 - 39923028
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| |||||||||||||||| || | |||||||| || || |||||||||||||||||||    
T  39923098 gagtgaaccatcaatttcgtccctgaatttttacaggtcggccaacttcgtccctcaattatgcgaaatat 39923028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 4520545 - 4520472
Alignment:
Q  178 gaagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||| |||||||| | |  |||||||||||  | | |||||||||||||||||    
T  4520545 gaagagtgaatcatcaacttcgtccttgaatttttatgagtcggccaaattcatccatcaattatgcgaaatat 4520472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 10768041 - 10767973
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| || || ||||||||||||||  ||||||||||| || |||||||||||||||||    
T  10768041 gagtgaaccatcaagttagttcctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaat 10767973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 25995206 - 25995155
Alignment:
Q  178 gaagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaattt 229  Q
    ||||||||||||||||||||||||| | ||||| |||| |||||||||||||    
T  25995206 gaagagtgaatcatcaacttcgtccataaatttgcacgaatcggccaaattt 25995155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 44556619 - 44556690
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||| |||| |||||||| ||||||||||||| |||| |||| |||||| || ||||||||||| |||||||    
T  44556619 agagggaattatcaactttgtccctgaatttttacgggtcggtcaaattagtccctcaattatgtgaaatat 44556690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 44794885 - 44794814
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| || ||||||||||||||||   |||| |||||| || |||||||||||||||||||    
T  44794885 agagtgaaccatcaatttagtccctgaattttcacacgtcggtcaaattcgtccctcaattatgcgaaatat 44794814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 47941811 - 47941881
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || ||||||||||||| |||| |||| |||||| ||  ||||||||||||||||||    
T  47941811 gagtgaaccatcaatttagtccctgaatttttacgggtcggtcaaattcgtctctcaattatgcgaaatat 47941881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 230435 - 230506
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||  ||| ||| |||  | |||||||||||| | || |||||||||||||||||||    
T  230435 agagtgaatcatcaactttatccttgagtttgtaaggatcggccaaaatcgtccctcaattatgcgaaatat 230506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 39083639 - 39083686
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||| |||||| |||||||||||||||||| || |||||||||||    
T  39083639 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaatt 39083686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 39921494 - 39921541
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||| |||||| |||||||||||||||||| || |||||||||||    
T  39921494 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaatt 39921541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 6999390 - 6999344
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||||||||| ||||||| ||||||| |||| ||||||||||||    
T  6999390 agtgaatcatcaatttcgtccttgaatttgcacgaatcggccaaatt 6999344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 39189383 - 39189429
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||| |||||| |||||||||||||||||| || |||||||||||    
T  39189383 agtgaaccatcaatttcgtccctgaattttcaggggtcggccaaatt 39189429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 5486144 - 5486096
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||||| |||||| |||||||||||||||| | || |||||||||||    
T  5486144 agagtgaaccatcaatttcgtccctgaatttttaggggtcggccaaatt 5486096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 42880880 - 42880832
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||||| |||||| || ||||||||||||||| || |||||||||||    
T  42880880 agagtgaaccatcaattttgtccctgaattttcaggggtcggccaaatt 42880832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 97983 - 97875
Alignment:
Q  11 cacagatttgttggttatggtgatggataaatgagatgttggtttcatgaagctgcagttataatttcatggtgaagaaggttggttttggagagagaac 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||    
T  97983 cacagatttgttggttatggtgatgaataaatgagatgttggtttcatgaagctgcagttataatttcatgatgaaggaggttggttttggaggaagaac 97884  T
Q  111 gggactgtt 119  Q
    || ||||||    
T  97883 ggaactgtt 97875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 41233 - 41163
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  41233 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattcgtccctcaattatgcgaaatat 41163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 6397964 - 6397862
Alignment:
Q  19 tgttggttatggtgatggata---aatgagatgttggtttcatgaagctgcagttataatttcatggtgaagaaggttggttttggagagagaacgggac 115  Q
    |||||||||||||| ||||||   |||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||  |||||| ||    
T  6397964 tgttggttatggtggtggatacaaaatgagatattggtttcacgaagctgcagttctaatttcatggtgaaggaggttggttttggagaatgaacggaac 6397865  T
Q  116 tgt 118  Q
    |||    
T  6397864 tgt 6397862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 11021532 - 11021603
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||    
T  11021532 agagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccctcaattatgcgaaatat 11021603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 15373979 - 15373909
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| ||||||||||| |||| | ||||||||||| ||||||||||||||||||||||    
T  15373979 gagtgaatcatcaacttagtccctgaattatcacaggtcggccaaattcgttcctcaattatgcgaaatat 15373909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 28248266 - 28248196
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||    
T  28248266 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 28248196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 33192 - 33263
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || || | ||||||||| |||||||    
T  33192 agagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgtgaaatat 33263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 41708522 - 41708451
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||| ||| ||||||| |||||| ||||||||||| || |||||||||||||||||||    
T  41708522 agagtgaatcatcaacttagtctctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatat 41708451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 42880903 - 42880832
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||| |||| |||| |||||| || ||| |||||||||||||||    
T  42880903 agagtgaatcatcaacttcgtccctgaatttttacgggtcggtcaaattcgtcccttaattatgcgaaatat 42880832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 29909786 - 29909714
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||| || |||||||||||||||||  |||||||| ||||| |||||||||||||||||||    
T  29909786 aagagtgaaccatcaaatttgtccctgaattttcacgcgtcggccaactttgtccctcaattatgcgaaatat 29909714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 361443 - 361515
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||| |  | ||||||||||| |||||||    
T  361443 aagagtgaatcatcaacttcgtccttgaattttcatgaatcggccaaaatcatccctcaattatgtgaaatat 361515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 41706537 - 41706609
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||| || || ||||||||||||||| |||| |||||| || |||||||||||||||||||    
T  41706537 aagagtgaaccatcaatttagttcctgaattttcacgggtcggtcaaattcgtccctcaattatgcgaaatat 41706609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 39564 - 39626
Alignment:
Q  189 catcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||| || ||||||||||||| |||| ||||||||||| || |||||||||||||||||||    
T  39564 catcaatttagtccctgaatttttacgggtcggccaaattcgtccctcaattatgcgaaatat 39626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 15372499 - 15372569
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||||| ||||||||||| |  |||||||||||| ||||||    
T  15372499 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgcccctcaattatgcaaaatat 15372569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 37418860 - 37418790
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||||| || | | |||||||| ||||||    
T  37418860 gagtgaatcatcaacttcgtacttgaattttcacgggtcggccaaattcgtcctttaattatgcaaaatat 37418790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 37417271 - 37417343
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||  ||||||| |||||||||| || |||||||||||  | |||||||||||||||||||    
T  37417271 aagagtgaaccatcatattcgtccttgaattttcatgggtcggccaaattcatccctcaattatgcgaaatat 37417343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 39521 - 39451
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || ||||| |||||||||||  || ||||| ||||| |||||||||||||||||||    
T  39521 gagtgaaccatcaaatttgtccccgaattttcacgcgtcagccaactttgtacctcaattatgcgaaatat 39451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 42003581 - 42003511
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||| |||||||| | |||||||| | ||||| | |||||| |||| |||||||||||||||||    
T  42003581 gagtgaatcattaacttcgttcttgaatttttaaggatcagtcaaattcgttcatcaattatgcgaaatat 42003511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 92472 - 92401
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||| || ||||||||||||||||| ||| | ||| || || |||||||||||||||||||    
T  92472 aagagtgaaccatcaaatt-gtccctgaattttcacgcatcagtcaacttcgtacctcaattatgcgaaatat 92401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 7744036 - 7744072
Alignment:
Q  174 tattgaagagtgaatcatcaacttcgtccctgaattt 210  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7744036 tatttaagagtgaatcatcaacttcgtccctgaattt 7744072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 11315460 - 11315406
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcc 234  Q
    ||||||||||||||||||||||| | |||||| | | |||||||||||| |||||    
T  11315460 agagtgaatcatcaacttcgtccttaaatttttatgaatcggccaaattcgttcc 11315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 17946089 - 17946123
Alignment:
Q  176 ttgaagagtgaatcatcaacttcgtccctgaattt 210  Q
    ||||||| |||||||||||||||||||||||||||    
T  17946089 ttgaagactgaatcatcaacttcgtccctgaattt 17946123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 42001610 - 42001680
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| |||||||| |||| | | |||||||| | |||| ||||||||||||||    
T  42001610 gagtgaaccatcaaattcgtccttgaatttttacgggttgtccaaatttatccctctattatgcgaaatat 42001680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 30639599 - 30639681
Alignment:
Q  169 attattattgaagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||    
T  30639599 attattattgaagagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaattagtccctcaattatgcaaaatat 30639681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35174391 - 35174461
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| || ||| ||||||||| ||||||||    
T  35174391 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtttctcaattatacgaaatat 35174461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 29077328 - 29077396
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  29077328 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaat 29077396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 4641355 - 4641425
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||||| ||||||||||| || ||||||||||| |||||||    
T  4641355 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccctcaattatgtgaaatat 4641425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 29112300 - 29112368
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| || |||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  29112300 gagtgaaccatcaagttagtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaat 29112368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 3018545 - 3018486
Alignment:
Q  192 caacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||  |||||||| || || |||||||||||||||||||    
T  3018545 caacttcgtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatat 3018486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 17950561 - 17950631
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||| |||||||||||| |||| |||||||| || || |||||||||||||||||||    
T  17950561 gagtgaaccatcaatttcatccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 17950631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 4646309 - 4646237
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||||||  |||||||||||| |||||||||  ||||| || | |||||||||||||||||    
T  4646309 aagagtgaaccatcaacttaatccctgaatttttacggatcggttaaattcgtccatcaattatgcgaaatat 4646237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 29114867 - 29114799
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| || |||||||||||||||||  ||||||||||| || | |||||||||||||||    
T  29114867 gagtgaaccatcaagttagtccctgaattttcacgcgtcggccaaattagtccttcaattatgcgaaat 29114799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 2968139 - 2968209
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||| ||||||||||| ||  ||||||| || |||||||||||||||||||    
T  2968139 gagtgaaccatcaatttagtccctcaattttcacgggtctcccaaattcgtccctcaattatgcgaaatat 2968209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 17952166 - 17952119
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||| |||||| |||||||||||||||||| || |||||||||||    
T  17952166 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaatt 17952119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 35175987 - 35175940
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||| |||||| ||||||| |||||||||| ||||||||||||||    
T  35175987 gagtgaaccatcaatttcgtccttgaattttcagggatcggccaaatt 35175940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 3018587 - 3018543
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaa 225  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||    
T  3018587 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaa 3018543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 31210530 - 31210458
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatattaa 254  Q
    |||||||||||| |||||| | |||||||  | ||||||| |||| | || ||| ||||||||||||||||||    
T  31210530 agtgaatcatcagcttcgttcttgaatttgtaaggatcggtcaaaatcgtcccttaattatgcgaaatattaa 31210458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 46810707 - 46810775
Alignment:
Q  183 gtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  46810707 gtgaatcatcaacttcgtccctgaattttcacggatcggccaaattagtccctcaattatgcgaaatat 46810775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 4321038 - 4321108
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || ||| |||||||||||||||    
T  4321038 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtcccttaattatgcgaaatat 4321108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 8421416 - 8421486
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||| || |||||||||||||||||||    
T  8421416 gagtgaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatat 8421486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 30108565 - 30108635
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||    
T  30108565 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 30108635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35342425 - 35342495
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| ||||||||||| | |||| |||||||||||||| |||||||||||||||||||    
T  35342425 gagtgaatcatcaacttagtccctgaattattacgggtcggccaaatttgtccctcaattatgcgaaatat 35342495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 46994660 - 46994730
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || | |||||||||||||||||    
T  46994660 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgcgaaatat 46994730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 36762766 - 36762701
Alignment:
Q  186 aatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||    
T  36762766 aatcatcaacttcgtccctgaatttttacggatcggccaaattagtccctcaattatgtgaaatat 36762701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 8423405 - 8423335
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  8423405 gagtgaaccatcaatttagtccctgaattttcacgggtcagccaaatttgtccctcaattatgcgaaatat 8423335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 3690151 - 3690220
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||| |||||||| || | |||||||| || ||||||||||||||||||||||    
T  3690151 agtgaatcatcaacttcgtccttgaatttttacagttcggccaacttcgttcctcaattatgcgaaatat 3690220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 36756973 - 36756904
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||| || ||||||||||| |||||||    
T  36756973 agtgaatcatcaacttcgttcctgaattttcatggatcggtcaaattagtccctcaattatgtgaaatat 36756904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 36766497 - 36766428
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||| || ||||||||||| |||||||    
T  36766497 agtgaatcatcaacttcgttcctgaattttcatggatcggtcaaattagtccctcaattatgtgaaatat 36766428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 45465278 - 45465205
Alignment:
Q  178 gaagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||| |||||||| |||| |||| ||| || || |||||||||||||||||||    
T  45465278 gaagagtgaatcatcaacttcgtccttgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatat 45465205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 46996826 - 46996756
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||||||||||||||||  |||||||| || || |||||||||||||||||||    
T  46996826 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaacttcgtccctcaattatgcgaaatat 46996756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 47341810 - 47341740
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| ||||||||||||| |||||||||||  | |||||||||||||||||||    
T  47341810 gagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcatccctcaattatgcgaaatat 47341740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 40785642 - 40785569
Alignment:
Q  178 gaagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||||||||  |  |||||||||| |||||||    
T  40785642 gaagagtgaatcatcaatttcgtccttgaattttcacgggtcggccaaattcatctctcaattatgtgaaatat 40785569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 33775406 - 33775478
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||| ||||||||||||||||||||| |||| |||| ||| || || | |||||||||||||||||    
T  33775406 aagagtgaatcgtcaacttcgtccctgaatttttacgggtcggtcaacttcgtccttcaattatgcgaaatat 33775478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 35344416 - 35344344
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||| || ||||| |||||||||||| || |||||||| || |||||||||||||||||||    
T  35344416 aagagtgaaccatcaatttagtccccgaattttcacgggtcagccaaattcgtccctcaattatgcgaaatat 35344344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 23955376 - 23955306
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||| ||||||||| | |||| ||||||||| || ||| ||||||| |||||||    
T  23955376 gagtgaatcatcaacttcgtctctgaatttttatggattggccaaattcgtcccttaattatgtgaaatat 23955306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 38613605 - 38613535
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| | ||||||||||| |||||||||||  | |||||||||||||||||||    
T  38613605 gagtgaaccatcaaattcgtccttcaattttcacgggtcggccaaattcatccctcaattatgcgaaatat 38613535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 38615037 - 38614961
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatattaac 255  Q
    ||||||||| |||||| ||||||| | ||||||||||| |||  ||||||  | |||||||||||||||||||||||    
T  38615037 aagagtgaaacatcaaattcgtccttaaattttcacgggtcgatcaaattcatccctcaattatgcgaaatattaac 38614961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 34784067 - 34784114
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  34784067 gagtgaatcatcaacttcgtccttgaatttgcacgaatcggccaaatt 34784114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 33038921 - 33038851
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| ||||||| |||||||| | || |||| ||||||  | |||||||||||||||||||    
T  33038921 gagtgaatcatcaaattcgtccttgaatttttatgggtcggtcaaattcatccctcaattatgcgaaatat 33038851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 47339781 - 47339846
Alignment:
Q  186 aatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||  |||| |||||||| || ||  |||||| |||||||||||    
T  47339781 aatcatcaacttcgtccctgaatttctacgggtcggccaacttcgtctctcaatgatgcgaaatat 47339846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 34692840 - 34692780
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaatt 240  Q
    ||||||||||||||||||  || |||||||| ||| |||||| ||||||||| ||||||||    
T  34692840 agagtgaatcatcaacttgatctctgaatttgcactgatcggtcaaatttgtacctcaatt 34692780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 46812708 - 46812636
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||||||||||| |||||||| |||  |||||||||||  | ||||||||| | |||||||    
T  46812708 aagagtgaaccatcaacttcgtccttgaatttttacgagtcggccaaattcatccctcaattacgtgaaatat 46812636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 45463670 - 45463717
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||| |||||| |||||||||||||||||| || |||||||||||    
T  45463670 gagtgaaccatcaatttcgtccctgaattttcaggggtcggccaaatt 45463717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 27955370 - 27955440
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| ||||||| |||||||| ||||||| || |||||  | |||||||| | ||||||||    
T  27955370 gagtgaatcatcaaattcgtccttgaatttttacggatcagctaaattcatccctcaattttacgaaatat 27955440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 30109789 - 30109743
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||| |||||| |||||||||||||||||| || |||||||||||    
T  30109789 agtgaaccatcaatttcgtccctgaattttcaggggtcggccaaatt 30109743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 38614883 - 38614813
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||| ||||| |||||||| | || |||| ||||||  | |||||||||||| ||||||    
T  38614883 gagtgaatcatcaactacgtccttgaatttttatgggtcggtcaaattcatccctcaattatgcaaaatat 38614813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 13169762 - 13169702
Alignment:
Q  191 tcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||| ||||||| ||||||||||   ||||||||||||||| ||| |||| ||||||||||    
T  13169762 tcaaattcgtccttgaattttcaaaaatcggccaaatttgtccctgaattttgcgaaatat 13169702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 40330606 - 40330536
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||    
T  40330606 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaaaatcgtccctcaattatgcgaaatat 40330536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 32090016 - 32089946
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||    
T  32090016 gagtgaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 32089946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 32835876 - 32835946
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||||||||||    
T  32835876 gagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaaattcgtcccttaattatgcgaaatat 32835946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 42619289 - 42619359
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||||    
T  42619289 gagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaatttcgtccctcaattatgcgaaatat 42619359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 33257851 - 33257781
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||| || || ||| |||||||||||||||    
T  33257851 gagtggatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtcccttaattatgcgaaatat 33257781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 18726565 - 18726635
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||||||||||||||||| |||| |   |||| || || |||||||||||||||||||    
T  18726565 gagtgaatcatcaacttcgtccctgaatttttacgggttccccaacttcgtccctcaattatgcgaaatat 18726635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35291048 - 35291118
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||  | |||||| |||| |||||||    
T  35291048 gagtgaatcatcaatgtcgtccctgaattttcacggttcggccaaattcatccctcaactatgtgaaatat 35291118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 38596868 - 38596938
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| |||||||| | || ||||||||||| || |||||||||||||||||||    
T  38596868 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaattcgtccctcaattatgcgaaatat 38596938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 1344907 - 1344835
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||| ||||||||||||||| || | ||||| ||||||||| || ||||| | ||||||||    
T  1344907 aagagtgaatcatcaatttcgtccctgaatttgcatgaatcggtcaaatttgtcccccaattttacgaaatat 1344835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 18728727 - 18728656
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| |||||||||||||||||||   |||||||| || || ||| |||||||||||||||    
T  18728727 agagtgaaccatcaaattcgtccctgaattttcacttgtcggccaacttcgtcccttaattatgcgaaatat 18728656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 35395332 - 35395403
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| ||| |||||||||||||||   |||||||| || || |||||||||||||||||||    
T  35395332 agagtgaaccatcaaattcatccctgaattttcacacgtcggccaacttcgtccctcaattatgcgaaatat 35395403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 38176643 - 38176702
Alignment:
Q  192 caacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||| || | ||||||||| || ||| |||||||||||||||    
T  38176643 caacttcgtccctgaattttcatgggttggccaaattcgtcccttaattatgcgaaatat 38176702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 38203867 - 38203926
Alignment:
Q  192 caacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||| || | ||||||||| || ||| |||||||||||||||    
T  38203867 caacttcgtccctgaattttcatgggttggccaaattcgtcccttaattatgcgaaatat 38203926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 24232149 - 24232222
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaa-ttttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||| |||||||||||||||||| |||| |||| | |||||||| |||||  ||||||||||||| |||||||    
T  24232149 aagagagaatcatcaacttcgtccttgaattttttatggatcggcaaaattcattcctcaattatgtgaaatat 24232222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 24498159 - 24498093
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcga 246  Q
    |||||||||||| |||||||||| ||||||| || ||||||| |||| |  | ||||||||||||||    
T  24498159 agagtgaatcattaacttcgtccgtgaatttgcaaggatcggtcaaaatcatccctcaattatgcga 24498093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 32087514 - 32087584
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||||||||||||||||  |||  ||| || || ||| |||||||||||||||    
T  32087514 gagtgaaccatcaaattcgtccctgaattttcacgcgtcgatcaacttcgtcccttaattatgcgaaatat 32087584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 38178217 - 38178147
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||  ||||| ||||||| | ||||||||||| |||| ||||||  | |||||||||||||||||||    
T  38178217 gagtgaactatcaaattcgtccttaaattttcacgggtcggtcaaattcatccctcaattatgcgaaatat 38178147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 38205441 - 38205371
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||  ||||| ||||||| | ||||||||||| |||| ||||||  | |||||||||||||||||||    
T  38205441 gagtgaactatcaaattcgtccttaaattttcacgggtcggtcaaattcatccctcaattatgcgaaatat 38205371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 43318184 - 43318114
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| |||||||| | || ||||||||| |  | |||||||||||||||||||    
T  43318184 gagtgaaccatcaaattcgtccttgaatttttatgggtcggccaaaatcatccctcaattatgcgaaatat 43318114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 27350625 - 27350596
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattt 210  Q
    ||||||||||||||||||||||||||||||    
T  27350625 gagtgaatcatcaacttcgtccctgaattt 27350596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 11152545 - 11152615
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||    
T  11152545 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaatttcgtccctcaattatgcgaaatat 11152615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 5784958 - 5784888
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||||    
T  5784958 gagtgaatcatcaacttcgtccctgaattttcacgggtcggtcaacttcgtccctcaattatgcgaaatat 5784888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 31803791 - 31803721
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || | |||||||||||||||||    
T  31803791 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgcgaaatat 31803721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 35478087 - 35478157
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||| ||||||    
T  35478087 gagtgaatcatcaacttcatccctgaattttcacgggtcggccaaattagtccctcaattatgcaaaatat 35478157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 45379085 - 45379155
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || ||| |||||||||||||||    
T  45379085 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtcccttaattatgcgaaatat 45379155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 27952591 - 27952521
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||| |||||||||||| ||||||||||| |||||| ||||||||||| || |||||||||||||||||||    
T  27952591 gagttaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtccctcaattatgcgaaatat 27952521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 35480099 - 35480029
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||||||||||| |||||||||||||||| ||||||||  | |||||||||||||||||||    
T  35480099 gagtgaaccatcaacttcgtccttgaattttcacggatcagccaaattcatccctcaattatgcgaaatat 35480029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 18180500 - 18180570
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| ||||||| |||||||||||||||||  |||||||||||  | |||||||||||||||||||    
T  18180500 gagtgaatcctcaactttgtccctgaattttcacgactcggccaaattcatccctcaattatgcgaaatat 18180570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 44159385 - 44159315
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| || || ||| |||||||| ||||||    
T  44159385 gagtgaatcatcaacttcgtccctgaattttcacagatcggtcaatttcgtcccttaattatgcaaaatat 44159315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 46636766 - 46636835
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||| |||||||||||||| ||||| || || || | |||||||||||||||||    
T  46636766 agtgaatcatcaacttcgtctctgaattttcacgggtcggctaacttcgtccttcaattatgcgaaatat 46636835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 47269580 - 47269512
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| ||||||||||||||||||||  ||||||||||| || |||||||||| ||||||    
T  47269580 gagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatacgaaat 47269512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 33685373 - 33685302
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| |||||||||||||||| |||| |||| ||||||  | |||||||||||||||||||    
T  33685373 agagtgaaccatcaaattcgtccctgaatttttacgggtcggtcaaattcatccctcaattatgcgaaatat 33685302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33679259 - 33679329
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| || |||| |||||||| |||| || |||||||| || |||||||||||||||||||    
T  33679259 gagtgaatcatcaattttgtccatgaatttttacgggtcagccaaattcgtccctcaattatgcgaaatat 33679329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 36894826 - 36894890
Alignment:
Q  185 gaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||||||||||||||||||||||| |||| |||||||| || ||   |||||||||||||||    
T  36894826 gaatcatcaacttcgtccctgaatttttacgggtcggccaacttcgtcattcaattatgcgaaat 36894890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 47264124 - 47264192
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||| |||||| || |||||||||||||||||  |||||||| || || |||||||||||||||||    
T  47264124 gagtgaaccatcaagttagtccctgaattttcacgcgtcggccaatttagtccctcaattatgcgaaat 47264192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 42134481 - 42134552
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| ||||||| |||||||| |||| ||||||||| |  | |||||||||||||||||||    
T  42134481 agagtgaaccatcaaattcgtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatat 42134552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 27940608 - 27940678
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||| | | || |||||| || |||||||||||||||||||    
T  27940608 gagtgaaccatcaatttagtccctgaattttcacaggttggtcaaattcgtccctcaattatgcgaaatat 27940678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 46638931 - 46638861
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||| ||||||||||||||  |||||||| ||  | |||||||||||||||||||    
T  46638931 gagtgaaccatcaaattcgttcctgaattttcacgcgtcggccaacttcatccctcaattatgcgaaatat 46638861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 6577195 - 6577126
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||  ||| | || ||||| ||||| || | |||||||||||||||||    
T  6577195 agtgaatcatcaacttcgtccctgacattttatgggtcggctaaattagtccttcaattatgcgaaatat 6577126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 44157432 - 44157503
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| ||||||  |||||| | ||||||||||| |||||||||||  | |||||||||||| ||||||    
T  44157432 agagtgaaccatcaaactcgtccttaaattttcacgggtcggccaaattcatccctcaattatgcaaaatat 44157503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 18184067 - 18183997
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||  |||||||| |||| ||||||||| |  | |||||||||||||||||||    
T  18184067 gagtgaaccatcaaattcgtctttgaatttttacggttcggccaaaatcatccctcaattatgcgaaatat 18183997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 36895634 - 36895564
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||||  |||| ||| || || | |||||||||||||||||    
T  36895634 gagtgaaccatcaaatttgtccctgaattttcacgcgtcggtcaacttcgtccatcaattatgcgaaatat 36895564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 42136335 - 42136265
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||| ||| |||||| | ||||||| ||| || || | | |||||||||||||||    
T  42136335 gagtgaatcatcaacttcgttcctaaatttttatggatcggtcaacttcgtcctttaattatgcgaaatat 42136265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 51123646 - 51123617
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattt 210  Q
    ||||||||||||||||||||||||||||||    
T  51123646 gagtgaatcatcaacttcgtccctgaattt 51123617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 31823567 - 31823497
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||| |||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||    
T  31823567 gagtggatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccctcaattatgcgaaatat 31823497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33748332 - 33748402
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||||||| || || | |||||||||||||||||    
T  33748332 gagtgaatcatcaacttcgtccctgaattttcacgggtcggccaacttcgtccttcaattatgcgaaatat 33748402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 25373713 - 25373643
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| ||| ||| |||||||||||| ||||||||||||  |||||||||||||||||||||    
T  25373713 gagtgaatcatcaagttcatccttgaattttcacgcatcggccaaattcattcctcaattatgcgaaatat 25373643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 32824362 - 32824292
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| ||  |||||||||||||| ||||||||||| || |||||||||||||||||||    
T  32824362 gagtgaatcatcaactttgtttctgaattttcacgggtcggccaaattagtccctcaattatgcgaaatat 32824292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 31199485 - 31199555
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||| || ||| ||||||| |||||||    
T  31199485 gagtgaatcatcaacttagtccctgaattatcacgggtcggccaaattcgtcccttaattatgagaaatat 31199555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 31201267 - 31201197
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  31201267 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccatcaattatgcgaaatat 31201197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 40019156 - 40019226
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||  |||||||| |||| |||||||| || || |||||||||||||||||||    
T  40019156 gagtgaatcatcaacttcgtctttgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 40019226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 461181 - 461245
Alignment:
Q  186 aatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaata 250  Q
    ||||||||||||||||| ||||||||||||| |||||||||||  | ||||||||||| ||||||    
T  461181 aatcatcaacttcgtccttgaattttcacgggtcggccaaattcatccctcaattatgtgaaata 461245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 38881429 - 38881496
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||||||||| ||||||| |||||||||||| ||| ||||||||  | |||||||||||||||||    
T  38881429 agtgaatcatcaaattcgtccttgaattttcacgaatcagccaaattcatccctcaattatgcgaaat 38881496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 24526896 - 24526966
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||| ||||||| ||||||||||||||||| ||||| |||||||| || || ||||||||||| |||||||    
T  24526896 gagtaaatcatccacttcgtccctgaatttacacgggtcggccaacttcgtccctcaattatgtgaaatat 24526966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 8654498 - 8654570
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| |||||| || ||| ||||||||| |||  |||| |||||| ||||||||||||||||||||||    
T  8654498 aagagtgaaccatcaatttagtctctgaatttttacgagtcggtcaaattcgttcctcaattatgcgaaatat 8654570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 28433832 - 28433781
Alignment:
Q  189 catcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaatt 240  Q
    |||||| |||||||||||||||||| |||||||||||||| || ||||||||    
T  28433832 catcaatttcgtccctgaattttcaaggatcggccaaattcgtccctcaatt 28433781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 42894775 - 42894846
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||| ||||||||||||| |||  ||||||||||||| ||| ||||||| || ||| |||||||||||||||    
T  42894775 agagcgaatcatcaactttgtctttgaattttcacgggtcgaccaaattcgtcccttaattatgcgaaatat 42894846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 25707392 - 25707322
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| ||| ||| | |||||| ||| ||||||||||||  | |||||||||||||||||||    
T  25707392 gagtgaatcatcaagttcatccttaaatttttacgcatcggccaaattcatccctcaattatgcgaaatat 25707322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 37526147 - 37526077
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| ||||||||||||  |||| ||||||  ||| |||||||||||||||||    
T  37526147 gagtgaaccatcaaattcgtccttgaattttcacgcgtcggtcaaattcattcttcaattatgcgaaatat 37526077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 42897898 - 42897828
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| | ||||| |||||||| |||| ||||||||||| || ||||||||||| |||||||    
T  42897898 gagtgaaccatcaaatccgtccttgaatttttacgggtcggccaaattcgtccctcaattatgtgaaatat 42897828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 32822361 - 32822422
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattat 242  Q
    ||||||| |||||||||||||| |||||||| | ||||||||||||||  | ||||||||||    
T  32822361 gagtgaaccatcaacttcgtccttgaatttttatggatcggccaaattcatccctcaattat 32822422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 462495 - 462424
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||| |||||| ||||||  |||||||| || |||||||||||||  | | |||||||||||||||||    
T  462495 agagtgaaccatcaaattcgtcattgaatttttacagatcggccaaattcatccgtcaattatgcgaaatat 462424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 9184383 - 9184430
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||||||||||| ||||||| ||||||| |||| ||||||||||||    
T  9184383 gagtgaatcatcaatttcgtccttgaatttgcacgaatcggccaaatt 9184430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 23811656 - 23811609
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||| ||| ||||||||||||||||||||  |||||||||||||||||    
T  23811656 gagtaaattatcaacttcgtccctgaattcgcacggatcggccaaatt 23811609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 33160273 - 33160202
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||| || |||||| ||||||| ||||||||||| | |||||||||||  | ||||||||||| |||||||    
T  33160273 agagtaaaccatcaaattcgtccttgaattttcacaggtcggccaaattcatccctcaattatgtgaaatat 33160202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 38882921 - 38882874
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    ||||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  38882921 gagtgaaccatcaaattcgtccttgaattttcacggatcggtcaaatt 38882874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 9186736 - 9186666
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||| ||||| ||||||| || ||||| |||||| | || ||  |||||||||||||||    
T  9186736 gagtgaatcatcaactccgtccttgaatttacaaggatcagccaaaatcgtccccaaattatgcgaaatat 9186666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 31821418 - 31821488
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||  ||||| |||||||||||||||||||   |||| ||| || || |||||||||||||||||||    
T  31821418 gagtgaacaatcaaattcgtccctgaattttcacacgtcggtcaacttcgtccctcaattatgcgaaatat 31821488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 210
Target Start/End: Complemental strand, 44620761 - 44620731
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattt 210  Q
    |||||||||||||||||||||||||||||||    
T  44620761 agagtgaatcatcaacttcgtccctgaattt 44620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 5075366 - 5075438
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||| ||||||| || | ||| |||||| | || ||  |||| ||||||||||    
T  5075366 aagagtgaatcatcaacttcgtccttgaatttgcaagcatcagccaaaatcgtccccaaattttgcgaaatat 5075438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 9876657 - 9876613
Alignment:
Q  177 tgaagagtgaatcatcaacttcgtccctgaattttcacggatcgg 221  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||    
T  9876657 tgaagagtgaatcatcaactttgtttctgaattttcactgatcgg 9876613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 11031427 - 11031499
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||| | ||| |||||||  | |||| ||||||| | ||||  ||||||||||||||||    
T  11031427 aagagtgaatcatcaactccatccttgaatttgtaaggatgggccaaaatcgttctccaattatgcgaaatat 11031499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 28432241 - 28432281
Alignment:
Q  186 aatcatcaacttcgtccctgaattttcacggatcggccaaa 226  Q
    |||||||||||| |||||||||||| ||| |||||||||||    
T  28432241 aatcatcaacttggtccctgaatttgcactgatcggccaaa 28432281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 33368757 - 33368829
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||| ||||||  |||||||| ||| ||||| | ||||  |  ||||||||||||||||||    
T  33368757 aagagtgaatcatcaaattcgtctttgaatttttacgaatcggtcgaattcatctctcaattatgcgaaatat 33368829  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33111841 - 33111911
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||  | |||||||||||||||||||    
T  33111841 gagtgaatcatcaacttcgtccctgaattttcacggctcggtcaaattcatccctcaattatgcgaaatat 33111911  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 38113565 - 38113477
Alignment:
Q  19 tgttggttatggtgatggata---aatgagatgttggtttcatgaagctgcagttataatttcatggtgaagaaggttggttttggaga 104  Q
    |||||||||||||| ||||||   |||||||| ||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||    
T  38113565 tgttggttatggtggtggatacaaaatgagatattggtttcacgaagctacagttctaatttcatggtgaaggaggttggttttggaga 38113477  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 48635464 - 48635394
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||| || ||| |||||||||||||||    
T  48635464 gagtgaatcatcaatttcgtccctgaattttcacggatcggtcaaattcgtcccttaattatgcgaaatat 48635394  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 51454374 - 51454304
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  51454374 gagtgaaccatcaaattcgtccttgaattttcacggatcggccaaattcattcctcaattatgcgaaatat 51454304  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 40508493 - 40508561
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| || ||| |||||||||||||    
T  40508493 gagtgaatcatcaacttcgtccctgaattttcacgggtcggacaaattcgtcccttaattatgcgaaat 40508561  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 45035490 - 45035388
Alignment:
Q  19 tgttggttatggtgatggata---aatgagatgttggtttcatgaagctgcagttataatttcatggtgaagaaggttggttttggagagagaacgggac 115  Q
    |||||||||||||| ||||||   |||||||| || |||||| |||||| ||||| |||||||||||||||| ||||||||||||||||  |||||| ||    
T  45035490 tgttggttatggtggtggatacaaaatgagatattcgtttcacgaagctacagttctaatttcatggtgaaggaggttggttttggagaatgaacggaac 45035391  T
Q  116 tgt 118  Q
    |||    
T  45035390 tgt 45035388  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 45897048 - 45897120
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||| || || |||||||||||||||||||    
T  45897048 aagagtgaatcatcaacttcgtccttgaatttttacgggtcggccaacttcgtccctcaattatgcgaaatat 45897120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 40509035 - 40508965
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| ||||||||||||| ||||||||||| || |||||||||||||||||||    
T  40509035 gagtgaaccatcaaattcgtccttgaattttcacgggtcggccaaattcgtccctcaattatgcgaaatat 40508965  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 18428746 - 18428819
Alignment:
Q  178 gaagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||| ||||||||||||||||||||||||||| |||| |||| ||| || || |||||||||||||||||||    
T  18428746 gaagagggaatcatcaacttcgtccctgaatttttacgggtcggtcaacttcgtccctcaattatgcgaaatat 18428819  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 41021128 - 41021059
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    |||||||| |||||| ||||||||||||||||||||  ||||||||||| || |||||||||||||||||    
T  41021128 agagtgaaccatcaaattcgtccctgaattttcacgcgtcggccaaattagtccctcaattatgcgaaat 41021059  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 23774152 - 23774222
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| ||||||||||||  ||||||||||| || |||||||||||||||||||    
T  23774152 gagtgaaccatcaaattcgtccttgaattttcacgagtcggccaaattcgtccctcaattatgcgaaatat 23774222  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 23887196 - 23887268
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||||||||||||| |||||||| | || ||||| || || || |||||||||||||||||||    
T  23887196 aagagtgaatcatcaacttcgtccttgaatttttatgggtcggctaacttcgtccctcaattatgcgaaatat 23887268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 1847736 - 1847666
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| || |||| ||||||||||||| |||||||||||  | |||||||||||| ||||||    
T  1847736 gagtgaatcatcaaatttgtccttgaattttcacgggtcggccaaattcatccctcaattatgcaaaatat 1847666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 2977453 - 2977383
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| ||||||| |||||||| ||| ||||||||||||  | ||| |||||||||||||||    
T  2977453 gagtgaatcatcaaattcgtccttgaatttttacgaatcggccaaattcatcccttaattatgcgaaatat 2977383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 23888896 - 23888826
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| |||||||||||||||||||   |||||||| || || |||||||||||||||||||    
T  23888896 gagtgaaccatcaaattcgtccctgaattttcacacgtcggccaacttcgtccctcaattatgcgaaatat 23888826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33850982 - 33851052
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    |||||||||||||| ||||| ||||||||||||||| |||| ||| || || |||||||||| ||||||||    
T  33850982 gagtgaatcatcaatttcgttcctgaattttcacgggtcggtcaacttcgtccctcaattatccgaaatat 33851052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 40998513 - 40998583
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaat 249  Q
    ||||||||| |||||| || |||||||||||||||||  |||| |||||| || |||||||||||||||||    
T  40998513 aagagtgaaccatcaagttagtccctgaattttcacgcgtcggtcaaattagtccctcaattatgcgaaat 40998583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 48633877 - 48633947
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| ||||||||||||| |||| |||||| || | |||||||||||||||||    
T  48633877 gagtgaaccatcaaattcgtccttgaattttcacgggtcggtcaaattcgtccatcaattatgcgaaatat 48633947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 45255486 - 45255555
Alignment:
Q  184 tgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatatta 253  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||  |  ||||||||||| ||||||||    
T  45255486 tgaatcatcaacttcgtccctgaatttttacggatcggtcaacttcatcactcaattatgcaaaatatta 45255555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 26447723 - 26447779
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctca 237  Q
    |||||||||||||||||||||||| ||||| |||| ||||| |||||| ||||||||    
T  26447723 gagtgaatcatcaacttcgtccctaaatttgcacgaatcggtcaaattcgttcctca 26447779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 24381759 - 24381814
Alignment:
Q  196 ttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||||| ||||||||||||||||  | |||||||||||||||||||    
T  24381759 ttcgtccttgaatttttacggatcggccaaattcatccctcaattatgcgaaatat 24381814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 40963489 - 40963430
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaatt 240  Q
    |||||||||||||||||||||||||||||| || | ||||| |||||| ||||| |||||    
T  40963489 gagtgaatcatcaacttcgtccctgaatttgcatgaatcggtcaaattcgttccccaatt 40963430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 18430395 - 18430325
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| |||||||| |||| || ||||||||  | |||||||||||||||||||    
T  18430395 gagtgaaccatcaaattcgtccttgaattttaacgggtcagccaaattcatccctcaattatgcgaaatat 18430325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 31887576 - 31887506
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| ||||||| |||||||||||||||||| ||||||    | |||||||||||||||||    
T  31887576 gagtgaaccatcaaattcgtccttgaattttcacggatcggtcaaattcaaccatcaattatgcgaaatat 31887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 45898472 - 45898402
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| |||||||||||||||||||   ||| |||| ||||| ||| |||||||||||||||    
T  45898472 gagtgaaccatcaaattcgtccctgaattttcacacgtcgaccaactttgtccctgaattatgcgaaatat 45898402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 41944574 - 41944623
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatt 228  Q
    |||||| || |||||| |||||||||||||||||| ||||||||||||||    
T  41944574 aagagtaaaccatcaatttcgtccctgaattttcagggatcggccaaatt 41944623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 45257346 - 45257282
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatg 243  Q
    ||||||||| |||||| ||||| | ||||||||||||| |||||||||||  | |||||||||||    
T  45257346 aagagtgaaccatcaaattcgttcttgaattttcacgggtcggccaaattcatccctcaattatg 45257282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 2975459 - 2975530
Alignment:
Q  180 agagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||||| ||| ||||||| |||||||| ||||||| || |||||  | ||||||| |||||||||||    
T  2975459 agagtgaatcaccaaattcgtccttgaatttttacggatcagctaaattcatccctcaatgatgcgaaatat 2975530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 23775735 - 23775676
Alignment:
Q  183 gtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattat 242  Q
    ||||||||||||||||||||||||||||||| |  || | ||||||||| ||| ||||||    
T  23775735 gtgaatcatcaacttcgtccctgaattttcatgagtcagtcaaatttgtcccttaattat 23775676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 33113304 - 33113234
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||| |||||||| |||| ||||||||| |  | |||||||||||||||||||    
T  33113304 gagtgaaccatcaaattagtccttgaatttttacgggtcggccaaaatcatccctcaattatgcgaaatat 33113234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 33852792 - 33852724
Alignment:
Q  183 gtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||||| || || |||| |||||||| |||| | || ||||||| | |||||||||||||||||||    
T  33852792 gtgaatcattaaatttgtccttgaatttttacgggttggtcaaatttatccctcaattatgcgaaatat 33852724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 49494477 - 49494505
Alignment:
Q  182 agtgaatcatcaacttcgtccctgaattt 210  Q
    |||||||||||||||||||||||||||||    
T  49494477 agtgaatcatcaacttcgtccctgaattt 49494505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 6758 - 6688
Alignment:
Q  181 gagtgaatcatcaacttcgtccctgaattttcacggatcggccaaatttgttcctcaattatgcgaaatat 251  Q
    ||||||| |||||| || |||||||||||||||||| ||||||||||| || ||||||||||| |||||||    
T  6758 gagtgaaccatcaatttagtccctgaattttcacgggtcggccaaattcgtccctcaattatgtgaaatat 6688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 210
Target Start/End: Complemental strand, 38371 - 38340
Alignment:
Q  179 aagagtgaatcatcaacttcgtccctgaattt 210  Q
    ||||||||||||||||||||||||||||||||    
T  38371 aagagtgaatcatcaacttcgtccctgaattt 38340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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