View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_24 (Length: 270)
Name: NF3310_low_24
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 17380467 - 17380589
Alignment:
| Q |
133 |
cttgtgtcaatatcttttgaattttgaattgttgttaggtcgtaattggattgacgtgtgcatggtctgcacaaaatatttctacatgacttagtttttc |
232 |
Q |
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| T |
17380467 |
cttgtgtcaatatcttttgaattttgaattgttgttaggtcttaattggattgaagtgtg----gtctgcacaaaatatttctacatgacttaatttttc |
17380562 |
T |
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| Q |
233 |
tgttatactattactgatattcttcat |
259 |
Q |
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| T |
17380563 |
tgttatactattactgatattcttcat |
17380589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 17389519 - 17389638
Alignment:
| Q |
136 |
gtgtcaatatcttttgaattttgaattgttgttaggtcgtaattggattgacgtgtgcatggtctgcacaaaatatttctacatgacttagtttttctgt |
235 |
Q |
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| T |
17389519 |
gtgtcaatatcttttgaattttgaattgttgttaggtcataattggatttacttgt---aggtgtgcacataat-tttctacatgacttattttttctgt |
17389614 |
T |
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| Q |
236 |
tatactattactgatattcttcat |
259 |
Q |
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| T |
17389615 |
tatactattattgatattcttcat |
17389638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 17380242 - 17380309
Alignment:
| Q |
18 |
attatgaccatttgtcattctctcgtcacccaaatccaatgaagagccctcaatttttagaaaattta |
85 |
Q |
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| T |
17380242 |
attatgaccatttgtcattctctcgtcacccaaatccaatgaagagccctcaatctttagaaaattta |
17380309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17384025 - 17384088
Alignment:
| Q |
20 |
tatgaccatttgtcattctctcgtcacccaaatccaatgaagagccctcaatttttagaaaattta |
85 |
Q |
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| T |
17384025 |
tatgaccatttgccatactct--tcacccaaatccaatggagagccctcaatttttagaaaattta |
17384088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 17392735 - 17392799
Alignment:
| Q |
19 |
ttatgaccatttgtcattctctcgtcacccaaatccaatgaagagccctcaatttttagaaaattta |
85 |
Q |
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| T |
17392735 |
ttatgaccattcatcatactct--tcacccaaatccaatggagagccctcaatttttagaaaattta |
17392799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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