View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_low_27 (Length: 261)
Name: NF3310_low_27
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_27 |
 | |
|
| [»] scaffold0209 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 115028 - 115272
Alignment:
| Q |
1 |
taatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115028 |
taatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcat |
115127 |
T |
|
| Q |
101 |
agattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115128 |
agattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataa |
115227 |
T |
|
| Q |
201 |
gagaatcaatcaaagaaacataattgcaaatgtaaggctcatcag |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115228 |
gagaatcaatcaaagaaacataattgcaaatgtaaggctcatcag |
115272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 178762 - 178518
Alignment:
| Q |
1 |
taatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcat |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
178762 |
taatgtacccatagcctttttccattcattgttgtagtgttcgttaagatcttctataagttggtaataacatgatgaatttgtcacaacatgtttgcat |
178663 |
T |
|
| Q |
101 |
agattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataa |
200 |
Q |
| |
|
|| |||||||||| | || |||||||||| ||||||||| |||||||| | | |||||||||||| ||| ||||| | || |||| ||| ||||||| |
|
|
| T |
178662 |
aggctgttaacaagtgtcgtcaattcctcgtcgcttcccagttcgtgcaccacaatttctttctcaacaagccactctacatcatctttggtttgaataa |
178563 |
T |
|
| Q |
201 |
gagaatcaatcaaagaaacataattgcaaatgtaaggctcatcag |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
178562 |
gagaatcaatcaaagaaacataattgcaaatgtaaggctcgtcag |
178518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 607437 - 607199
Alignment:
| Q |
1 |
taatgtacccatagcccttttccactcactgttgtagtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcat |
100 |
Q |
| |
|
||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |
|
|
| T |
607437 |
taatggacccatagcctttctccatccactgttgtagtgttcattaagatcttccataagttggtaataacacgatgaattcgtcacaacatgtttggat |
607338 |
T |
|
| Q |
101 |
agattgttaacaaggcttgttaattcctcgttgcttcccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataa |
200 |
Q |
| |
|
| |||| ||||||| || ||||||||||||| |||||| || || |||||||||| ||||||||||| | ||||||||| || |||| ||||| ||||| |
|
|
| T |
607337 |
aaattgataacaagactcgttaattcctcgtggcttcctagttcatgcacaatcatatctttctcaaccaacaactctgcatcatctttggtgtcaataa |
607238 |
T |
|
| Q |
201 |
gagaatcaatcaaagaaacataattgcaaatgtaaggct |
239 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
607237 |
gagaatcaagcaaagaaacataattgcaaatgtagggct |
607199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 9466 - 9668
Alignment:
| Q |
38 |
tgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttc |
137 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| ||||| |||||| ||||||||||||| ||||||||| | | |||||||||| |||| |
|
|
| T |
9466 |
tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctcgtcacttc |
9565 |
T |
|
| Q |
138 |
ccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataagagaatcaatcaaagaaacataattgcaaatgtaagg |
237 |
Q |
| |
|
| || ||||||||||||||||||||||| || | ||||||||| || |||| |||||||||||||||||||| ||||||||||| || ||||| || || |
|
|
| T |
9566 |
ctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacatagttacaaatataggg |
9665 |
T |
|
| Q |
238 |
ctc |
240 |
Q |
| |
|
||| |
|
|
| T |
9666 |
ctc |
9668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 22920 - 23122
Alignment:
| Q |
38 |
tgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgcttc |
137 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| ||||| |||||| ||||||||||||| ||||||||| | | |||||||||| |||| |
|
|
| T |
22920 |
tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagaccgttaacaagattcgccaattcctcgtcacttc |
23019 |
T |
|
| Q |
138 |
ccagatcgtgcacaatcacttctttctcaactagcaactctgcgtcttcttcggtgtgaataagagaatcaatcaaagaaacataattgcaaatgtaagg |
237 |
Q |
| |
|
| || ||||||||||||||||||||||| || | ||||||||| || |||| |||||||||||||||||||| ||||||||||| || ||||| || || |
|
|
| T |
23020 |
ctagttcgtgcacaatcacttctttctcgaccaacaactctgcatcatctttggtgtgaataagagaatcaagaaaagaaacatagttacaaatataggg |
23119 |
T |
|
| Q |
238 |
ctc |
240 |
Q |
| |
|
||| |
|
|
| T |
23120 |
ctc |
23122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 37437783 - 37437885
Alignment:
| Q |
36 |
agtgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaaggcttgttaattcctcgttgct |
135 |
Q |
| |
|
|||| ||||||| |||||||| |||||| || |||||||| ||||| | |||||||| ||||||||||||||| | || ||||| ||||||| || ||| |
|
|
| T |
37437783 |
agtggtcattaaaatcttccacaagttgatagtaacacgatgaattcgccacaacatatttgcatagattgttgatgagacttgtcaattccttgtggct |
37437882 |
T |
|
| Q |
136 |
tcc |
138 |
Q |
| |
|
||| |
|
|
| T |
37437883 |
tcc |
37437885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 37437912 - 37437954
Alignment:
| Q |
180 |
cgtcttcttcggtgtgaataagagaatcaatcaaagaaacata |
222 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37437912 |
cgtcatctttggtgtgaataagacaatcaatcaaagaaacata |
37437954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University