View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3310_low_3 (Length: 1056)
Name: NF3310_low_3
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 960; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 19 - 1040
Target Start/End: Complemental strand, 46611540 - 46610519
Alignment:
| Q |
19 |
caggaatgggtggtttaactgtattttctgaaggagttaagaatttgattgaaaagggatatagaaagataacaccnnnnnnnattccttatgctattac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46611540 |
caggaatgggtggtttaactgtattttctgaaggagttaagaatttgattgaaaagggatatagaaagataacacctttttttattccttatgctattac |
46611441 |
T |
|
| Q |
119 |
aaatatgggttcagctttgcttgggattgatttaggttttatgggtccaaattattctatttcaactgcttgtgctacttcaaattattgtttttatgct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46611440 |
aaatatgggttcagctttgcttgggattgatttaggttttatgggtccaaattattctatttctactgcttgtgctacttcaaattattgtttttatgct |
46611341 |
T |
|
| Q |
219 |
gctgccaatcacattcgtagaggtgaggctgatttgatgatcgccggtgggactgaggctgcgattattccgattggtttgggtggttttgttgcttgta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46611340 |
gctgccaatcacattcgtagaggtgaggctgatttgatgatcgccggtgggactgaggctgcgattattccgattggtttgggtggttttgttgcttgta |
46611241 |
T |
|
| Q |
319 |
gggcactttctcagagaaatgatgaccctaaaactgcttctaggccttgggataaagcacgtgatggttttgttatgggtgaaggttctggagttttggt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46611240 |
gggcactttctcagagaaatgatgaccctaaaactgcttctaggccttgggataaagcacgtgatggttttgttatgggtgaaggttctggagttttggt |
46611141 |
T |
|
| Q |
419 |
aaggatttatttctctcaacgtctttaatgttttcttgttattgttttggattggatgttgttggttaccttaattaacaatatggggagttgggcagct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46611140 |
aaggatttatttctctcaacgtctttaatgttttcttgttattgttttggattggatgttgttggttaccttaattaacaatatggggagttgggcagct |
46611041 |
T |
|
| Q |
519 |
caagggttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacatttgagtaaaaatatacaca |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46611040 |
caagggttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacatttgagtaaaaatatacaca |
46610941 |
T |
|
| Q |
619 |
aaattcatgattgagtagaattcaattgcaattgctactgctaaacttgcttcttaagatggtctatttttaatactattgtgagcattgtaacagcatt |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46610940 |
aaattcatgattgagtagaattcaattgcaattgctactgctatacttgcttcttaagatgatctatttttaatactattgtgagcattgtaacagcatt |
46610841 |
T |
|
| Q |
719 |
atcttttcctttgtacatgatccaaaaaagaataattctaaaccttgcatctttgaagtgtttaagaagtagccatgttgtgtgtgtcctgnnnnnnngg |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46610840 |
atcttttcctttgtacatgatccaaaaaagaataattctaaaccttgcatctttgaagtgtttaagaagtagccatgttgtgtgtgtcctgtttttttgg |
46610741 |
T |
|
| Q |
819 |
gtcctatttaagttaatttctatattgtaacgagagtactataacttcacaggtattggaaagcctggaacatgccatgaagcgaggtgcacctattatt |
918 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46610740 |
gtcctatttaagctaatttctatattgtaacgagagtactataacttcacaggtattggaaagcctggaacatgccatgaagcgaggtgcacctattatt |
46610641 |
T |
|
| Q |
919 |
gctgaatatttgggaggtgctgttaactgtgatgcttatcacatgactgatccaagatctgacggactcggcgtgtctacatgcatccagagcagccttg |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46610640 |
gctgaatatttgggaggtgctgttaactgtgatgcttatcacatgactgatccaagatctgacggactcggcgtgtctacatgcatccagagcagccttg |
46610541 |
T |
|
| Q |
1019 |
aagatgccggtgtgtctcctga |
1040 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
46610540 |
aagacgccggtgtgtctcctga |
46610519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 603
Target Start/End: Complemental strand, 22544617 - 22544586
Alignment:
| Q |
572 |
aattaatctaacaactaaatactaacatttga |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22544617 |
aattaatctaacaactaaatactaacatttga |
22544586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 262; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 38471945 - 38472351
Alignment:
| Q |
19 |
caggaatgggtggtttaactgtattttctgaaggagttaagaatttgattgaaaagggatatagaaagataacaccnnnnnnnattccttatgctattac |
118 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||| ||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
38471945 |
caggaatgggtggtttaacggtgttttctgatggagttaagaatctgattgaaaagggacatagaaagatatcacctttttttattccctatgctattac |
38472044 |
T |
|
| Q |
119 |
aaatatgggttcagctttgcttgggattgatttaggttttatgggtccaaattattctatttcaactgcttgtgctacttcaaattattgtttttatgct |
218 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
38472045 |
caatatggcttcagctttacttgggattgatttaggtttcagaggtccaaattattctatttcaactgcttgtgctacttcaaattattgctttgttgct |
38472144 |
T |
|
| Q |
219 |
gctgccaatcacattcgtagaggtgaggctgatttgatgatcgccggtgggactgaggctgcgattattccgattggtttgggtggttttgttgcttgta |
318 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
38472145 |
gctgccaatcacattcgtaggggtgaagctgatttgatgattgcgggtggtactgaagctgctattattcctattggtttggggggttttgttgcttgca |
38472244 |
T |
|
| Q |
319 |
gggcactttctcagagaaatgatgaccctaaaactgcttctaggccttgggataaagcacgtgatggttttgttatgggtgaaggttctggagttttggt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38472245 |
gggcactttctcagagaaatgatgaccctaaaacggcttctaggccttgggataaagaccgtgatggatttgttatgggtgaaggtgctggagttttggt |
38472344 |
T |
|
| Q |
419 |
aaggatt |
425 |
Q |
| |
|
||||||| |
|
|
| T |
38472345 |
aaggatt |
38472351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 841 - 1034
Target Start/End: Original strand, 38472606 - 38472799
Alignment:
| Q |
841 |
tattgtaacgagagtactataacttcacaggtattggaaagcctggaacatgccatgaagcgaggtgcacctattattgctgaatatttgggaggtgctg |
940 |
Q |
| |
|
|||| ||| ||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
38472606 |
tattttaaagagagtactgtaatttaacaggtgatggaaagcctggaacatgccatgaagcgaggtgcgcctatcattgctgaatacttgggaggtgctg |
38472705 |
T |
|
| Q |
941 |
ttaactgtgatgcttatcacatgactgatccaagatctgacggactcggcgtgtctacatgcatccagagcagccttgaagatgccggtgtgtc |
1034 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||| || || ||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
38472706 |
taaactgtgatgcttatcatatgactgatccaagatctgatgggcttggcgtgtcttcatgcatccagagcagtcttgtagatgccggtgtgtc |
38472799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 683 - 765
Target Start/End: Original strand, 38472459 - 38472541
Alignment:
| Q |
683 |
tatttttaatactattgtgagcattgtaacagcattatcttttcctttgtacatgatccaaaaaagaataattctaaaccttg |
765 |
Q |
| |
|
||||| ||| |||||| | ||| |||||||| || |||||||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
38472459 |
tatttgtaagactattattagctttgtaacaacactatcttttcctttgtacatgatccgtaaaagaataactctaaatcttg |
38472541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 520 - 589
Target Start/End: Original strand, 2097109 - 2097177
Alignment:
| Q |
520 |
aagggttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaa |
589 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| | ||||| || ||||| ||||||||||||||||| |
|
|
| T |
2097109 |
aagggttaaggagttggaggtcctgggttcaaacccggacaagggagtaaat-attaatctaacaactaa |
2097177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 589
Target Start/End: Original strand, 38752238 - 38752280
Alignment:
| Q |
546 |
gttcaaactcagacaaatgaataaataattaatctaacaactaa |
589 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
38752238 |
gttcaaactcagacaaatgaataaat-attaatctaataactaa |
38752280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 601
Target Start/End: Original strand, 38020398 - 38020478
Alignment:
| Q |
520 |
aagggttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacattt |
601 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | ||| || || |||||| |||||||||||||| | ||||||||||| |
|
|
| T |
38020398 |
aagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaata-ttaatctaacaactgattactaacattt |
38020478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 539 - 599
Target Start/End: Original strand, 23355909 - 23355968
Alignment:
| Q |
539 |
gtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacat |
599 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||| |
|
|
| T |
23355909 |
gtcctgggttcaaactcagacaaaggagtaaata-ttaatctaaaaactaaatactaacat |
23355968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 602
Target Start/End: Complemental strand, 35451201 - 35451132
Alignment:
| Q |
532 |
gttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacatttg |
602 |
Q |
| |
|
||||||||| || ||||||||||| || ||||| |||||| |||||||||||||||| || ||||||||| |
|
|
| T |
35451201 |
gttggaggttttgggttcaaactcaaacgaatgagtaaata-ttaatctaacaactaattattaacatttg |
35451132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 916 - 986
Target Start/End: Original strand, 42186572 - 42186642
Alignment:
| Q |
916 |
attgctgaatatttgggaggtgctgttaactgtgatgcttatcacatgactgatccaagatctgacggact |
986 |
Q |
| |
|
||||||||||||||||| ||||| | | ||||||||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
42186572 |
attgctgaatatttgggtggtgccataacatgtgatgctcatcacatgactgatcctagatctgatggact |
42186642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 42195781 - 42195855
Alignment:
| Q |
159 |
atgggtccaaattattctatttcaactgcttgtgctacttcaaattattgtttttatgctgctgccaatcacatt |
233 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| || ||||||| || |||||||||||| | ||||||||| |
|
|
| T |
42195781 |
atgggaccaaattattccatttctactgcttgtgcaacagcaaattactgcttttatgctgcttctaatcacatt |
42195855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 546 - 599
Target Start/End: Complemental strand, 36665292 - 36665240
Alignment:
| Q |
546 |
gttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacat |
599 |
Q |
| |
|
|||||||| | |||||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
36665292 |
gttcaaacccggacaaaggaataaata-ttaatctaacaactaactactaacat |
36665240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 9860802 - 9860757
Alignment:
| Q |
527 |
aaggtgttggaggtcctgagttcaaactcagacaaatgaataaata |
572 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
9860802 |
aaggagttggaggtcctgagttcaaactcagacaaaggagtaaata |
9860757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 602
Target Start/End: Original strand, 6296878 - 6296958
Alignment:
| Q |
520 |
aagggttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacatttg |
602 |
Q |
| |
|
||||| ||||| ||||||||| ||| |||||||| |||||||| || ||| | ||||||||||||||| |||||||||||| |
|
|
| T |
6296878 |
aagggataaggagttggaggttctgggttcaaacccagacaaaggagaaaa--actaatctaacaactaattactaacatttg |
6296958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 589
Target Start/End: Complemental strand, 28590419 - 28590356
Alignment:
| Q |
527 |
aaggtgttggaggtcctgagttcaaactcagacaaatga-ataaataattaatctaacaactaa |
589 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| || | ||| || ||||||||||||||| |
|
|
| T |
28590419 |
aaggtgttggaggtcctgagttcaaacccggacaaaggagaaaaaaaactaatctaacaactaa |
28590356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 520 - 601
Target Start/End: Original strand, 42529460 - 42529540
Alignment:
| Q |
520 |
aagggttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacattt |
601 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||| | || || || ||||| ||||||||||||| | | ||||||||||| |
|
|
| T |
42529460 |
aagggataaggagttggaggtcatgagttcaaacttaaacgaaagagtaaat-attaatctaacaattgactactaacattt |
42529540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 525 - 602
Target Start/End: Complemental strand, 46532968 - 46532892
Alignment:
| Q |
525 |
ttaaggtgttggaggtcctgagttcaaactcagacaaatgaataaataattaatctaacaactaaatactaacatttg |
602 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| ||||||||||| ||||| ||| |||||||||||| |||||| ||||| |
|
|
| T |
46532968 |
ttaaggagttggaggtactgagtttaaatccagacaaatgattaaat-attgatctaacaactatctactaatatttg |
46532892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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