View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_34 (Length: 244)
Name: NF3310_low_34
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 132 - 228
Target Start/End: Complemental strand, 34753701 - 34753605
Alignment:
| Q |
132 |
tcctggatgtaaactctcctactaaccgctacaaacaacccgaaaacataagaacagcatacttgaacgaggaagaaattcatgatacgattaatat |
228 |
Q |
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| T |
34753701 |
tcctggatgtaaactctcctactaaccgctacaaacaacccgaaaacataagaacagcatgcttgaacgaggaagaaattcatgatacgattaatat |
34753605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 34753527 - 34753477
Alignment:
| Q |
178 |
cataagaacagcatacttgaacgaggaagaaattcatgatacgattaatat |
228 |
Q |
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| T |
34753527 |
cataagaacagcatgcttgaacgaggaagaaattcatgatacaattaatat |
34753477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 34753399 - 34753349
Alignment:
| Q |
178 |
cataagaacagcatacttgaacgaggaagaaattcatgatacgattaatat |
228 |
Q |
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| T |
34753399 |
cataagaacagcatgcttgaacgaggaagaaattcattatacaattaatat |
34753349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 6685098 - 6685166
Alignment:
| Q |
5 |
gttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
73 |
Q |
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| T |
6685098 |
gttaatccatacttcacaatgtcatcatgaagctcttagagatcaaaatcaaccagcaaaattggttct |
6685166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26357876 - 26357948
Alignment:
| Q |
1 |
ccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357876 |
ccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
26357948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 51759698 - 51759766
Alignment:
| Q |
5 |
gttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
73 |
Q |
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|||||||||| ||||||||||| | || ||| || ||||||| || |||||||||||||||||||||| |
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| T |
51759698 |
gttaatccatacttcacaatgtcacgatgaagcttttagagatcaaaatcaagcagcaaaataggttct |
51759766 |
T |
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