View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_37 (Length: 241)
Name: NF3310_low_37
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20141467 - 20141689
Alignment:
| Q |
1 |
attaatgagacgcctataataattgctataagtgtagacgagtattgaccacacatttttcagtacactactagctagctagttgaaaagggaaataaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141467 |
attaatgagacgcctataataattgctataagtgtagacgagtattgaccacacatttttcagtacactactagctagctagttgaaaagggaaataaaa |
20141566 |
T |
|
| Q |
101 |
ggtggagggatttaaagnnnnnnntggaataataaggattctgaattctgatagaaagatagatattgcacatgagggaaatcatttttcattgaagaat |
200 |
Q |
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| T |
20141567 |
ggtggagggatttaaagaaaaaaatggaataataaggattctgaattctgatagaaagatagatattgcacatgagggaaatcatttttcattgaagaat |
20141666 |
T |
|
| Q |
201 |
ttcttcttacgggtacaccctcc |
223 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
20141667 |
ttcttattacgggtacaccctcc |
20141689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 44318882 - 44319104
Alignment:
| Q |
1 |
attaatgagacgcctataataattgctataagtgtagacgagtattgaccacacatttttcagtacactactagctagctagttgaaaagggaaataaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318882 |
attaatgagacgcctataataattgctataagtgtagacgagtattgaccacacatttttcagtacactactagctagctagttgaaaagggaaataaaa |
44318981 |
T |
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| Q |
101 |
ggtggagggatttaaagnnnnnnntggaataataaggattctgaattctgatagaaagatagatattgcacatgagggaaatcatttttcattgaagaat |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318982 |
ggtggagggatttaaagaaaaaaatggaataataaggattctgaattctgatagaaagatagatattgcacatgagggaaatcatttttcattgaagaat |
44319081 |
T |
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| Q |
201 |
ttcttcttacgggtacaccctcc |
223 |
Q |
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||||| ||||||||||||||||| |
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| T |
44319082 |
ttcttattacgggtacaccctcc |
44319104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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