View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3310_low_4 (Length: 546)

Name: NF3310_low_4
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3310_low_4
NF3310_low_4
[»] chr4 (14 HSPs)
chr4 (1-275)||(34137922-34138195)
chr4 (297-494)||(34139108-34139306)
chr4 (337-488)||(34136197-34136348)
chr4 (491-546)||(34139330-34139385)
chr4 (434-488)||(34141926-34141980)
chr4 (65-161)||(5535753-5535848)
chr4 (65-156)||(46462419-46462510)
chr4 (494-543)||(34142013-34142062)
chr4 (65-153)||(21586931-21587019)
chr4 (96-159)||(6087503-6087566)
chr4 (98-152)||(12596748-12596802)
chr4 (65-135)||(23208677-23208747)
chr4 (111-159)||(21208659-21208707)
chr4 (98-154)||(47397952-47398008)
[»] chr2 (3 HSPs)
chr2 (69-159)||(29765707-29765797)
chr2 (65-134)||(10099591-10099660)
chr2 (95-135)||(44587674-44587714)
[»] chr7 (6 HSPs)
chr7 (93-135)||(34564994-34565036)
chr7 (72-135)||(27163196-27163259)
chr7 (65-164)||(37491275-37491374)
chr7 (65-159)||(43813132-43813226)
chr7 (94-159)||(3967773-3967838)
chr7 (65-130)||(6250636-6250701)
[»] chr1 (3 HSPs)
chr1 (87-154)||(44673898-44673965)
chr1 (96-154)||(6340640-6340698)
chr1 (101-153)||(29204487-29204537)
[»] chr3 (3 HSPs)
chr3 (94-159)||(39682616-39682681)
chr3 (111-159)||(8036543-8036591)
chr3 (107-135)||(36447898-36447926)
[»] chr5 (4 HSPs)
chr5 (65-140)||(14631042-14631117)
chr5 (65-140)||(18942025-18942100)
chr5 (65-114)||(30489135-30489184)
chr5 (76-152)||(4162853-4162928)
[»] scaffold0014 (1 HSPs)
scaffold0014 (65-135)||(133176-133246)
[»] chr6 (2 HSPs)
chr6 (65-162)||(7158260-7158357)
chr6 (95-135)||(9246115-9246155)
[»] scaffold0148 (1 HSPs)
scaffold0148 (94-154)||(21189-21249)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 34137922 - 34138195
Alignment:
Q  1 tatctcatataacgtagttagttagcattagttacatgtgatgtcactaacattactatatgatttcattgaataaatgatgtttatagttgataatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34137922 tatctcatataacgtagttagttagcattagttacatgtgatgtcactaacattactatatcatttcattgaataaatgatgtttatagttgataatata 34138021  T
Q  101 gaccacatatatcacttattcaattaacct-aaaaattaaatgtttgcttataattgtgatcaaaaataatattatttagagactttgaatacaaaatat 199  Q
    ||||   ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||   ||||||||||||| | ||||||||||||||||||||    
T  34138022 gacctagtatatcacttattcaattaacctaaaaaaataaatttttgcttataattatgattggaaataatattattgaaagactttgaatacaaaatat 34138121  T
Q  200 tgataacttgtcttctttatatttgacctatattaaaaatgagatacataaattattcaataaatatgtaaaataa 275  Q
    |||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  34138122 tgataacttgtcttc--tctatttgacctatattaaaaatgaaatacataaattattcaataaatatgaaaaataa 34138195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 297 - 494
Target Start/End: Original strand, 34139108 - 34139306
Alignment:
Q  297 atgagataaattgcatacatactgcacccagtaattctaatagcaagtttgactgtagccagttgctcatttcagaaacaccgatcaatctttggttgtt 396  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  34139108 atgagataaattgcatacataatgcacccagtaattctaata-caaatttgattgtagccagttgctcattttagaaacaccgatcaatctttggttgtt 34139206  T
Q  397 tacatgagctaagtaatacatttattaaaatatctttctctaaggtagct--tataatgataaatttgaagattctcctcttcttgtttcttgaggttac 494  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||    
T  34139207 tacatgagctaagtcatacatttattaaaatatctttctctaaggtagcttatataatgataaatttgaagattctcctcttcttgtttcttgaagttac 34139306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 337 - 488
Target Start/End: Original strand, 34136197 - 34136348
Alignment:
Q  337 tagcaagtttgactgtagccagttgctcatttcagaaacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctc 436  Q
    |||||| ||||| || ||||| |  |||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  34136197 tagcaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgtaaatgagctaagtgatacatttattaaactatctttctc 34136296  T
Q  437 taaggtagcttataatgataaatttgaagattctcctcttcttgtttcttga 488  Q
    ||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  34136297 tactgtagcttataatgataaatttgaagattctcctcatcttgtttcttga 34136348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 34139330 - 34139385
Alignment:
Q  491 ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctc 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34139330 ttaccccatttataaggcttatattttgaagggttttgctcgttaataagctcctc 34139385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 34141926 - 34141980
Alignment:
Q  434 ctctaaggtagcttataatgataaatttgaagattctcctcttcttgtttcttga 488  Q
    ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||    
T  34141926 ctctagggtagcttataatgataaatttgaagattctccacatcttgtttcttga 34141980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 5535753 - 5535848
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtgatc 161  Q
    |||||| |||||||||||| | ||||| ||| ||||||||||||| |||| ||||| ||| ||||||| || | ||| |||||||||||| ||||||    
T  5535753 ttcattcaataaatgatgtatgtagtttata-tatagaccacatacatcagttattgaatgaacctaacaagtcaatttttgcttataatagtgatc 5535848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 46462419 - 46462510
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattg 156  Q
    |||||| |||||||||||| ||| ||| |||||| |||| ||||| |||| ||||||||| |||||||||| | ||   |||||||||||||    
T  46462419 ttcattaaataaatgatgtatatggtttataataaagactacatacatcatttattcaatgaacctaaaaagtgaaaaattgcttataattg 46462510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 34142013 - 34142062
Alignment:
Q  494 ccccatttataaggcttatattttgaagggttttgctcgttaataagctc 543  Q
    ||||||||||| ||| |||||||||||||||||||||| || ||||||||    
T  34142013 ccccatttatatggcctatattttgaagggttttgctcatttataagctc 34142062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 21587019 - 21586931
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataa 153  Q
    |||||| |||||||||||| | ||||  |||||||||  |||||| |||| ||||| |||| ||||||||| ||||  |||||||||||    
T  21587019 ttcattcaataaatgatgtatgtagtctataatataggacacatacatcatttattgaatttacctaaaaaataaacttttgcttataa 21586931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 6087503 - 6087566
Alignment:
Q  96 atatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    |||||||| ||||| |||| ||||| ||| || || |||||||||| |||||||||||||||||    
T  6087503 atatagactacatacatcatttattgaataaatctgaaaattaaatttttgcttataattgtga 6087566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 12596748 - 12596802
Alignment:
Q  98 atagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttata 152  Q
    ||||||||||||||||| ||||| ||| |||||||||| ||||| |||| |||||    
T  12596748 atagaccacatatatcatttattgaatgaacctaaaaagtaaatttttgtttata 12596802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 23208677 - 23208747
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaa 135  Q
    ||||||| |||| |||||| | || || |||||||||| || |||||||| |||||||| |||||||||||    
T  23208677 ttcattgtataattgatgtatttaatttataatatagatcagatatatcagttattcaactaacctaaaaa 23208747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 21208659 - 21208707
Alignment:
Q  111 atcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    |||||||||||||| |||||||||| ||| | |||||||||||| ||||    
T  21208659 atcacttattcaatgaacctaaaaaataattttttgcttataatagtga 21208707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 47397952 - 47398008
Alignment:
Q  98 atagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataat 154  Q
    ||||||||||||||||| ||||| ||| |||||||||| | || ||||| |||||||    
T  47397952 atagaccacatatatcatttattgaataaacctaaaaaatgaaggtttgtttataat 47398008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 29765707 - 29765797
Alignment:
Q  69 ttgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    ||||||||||||| | ||| ||| |||||||||||| ||||||||||||||||||| || ||||||| |  || |||| ||||||||||||    
T  29765707 ttgaataaatgatatatatggtttataatatagaccgcatatatcacttattcaatgaatctaaaaagttgatttttggttataattgtga 29765797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 10099591 - 10099660
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaa 134  Q
    |||||| ||| |||||||| | | ||| |||||||||||||||||||||| | ||| ||| |||||||||    
T  10099591 ttcatttaattaatgatgtatgtggtttataatatagaccacatatatcattaattgaatgaacctaaaa 10099660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 44587714 - 44587674
Alignment:
Q  95 aatatagaccacatatatcacttattcaattaacctaaaaa 135  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  44587714 aatatagaccacatacatcatttattcaatgaacctaaaaa 44587674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 34564994 - 34565036
Alignment:
Q  93 ataatatagaccacatatatcacttattcaattaacctaaaaa 135  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  34564994 ataatatagaccacatacatcacttattcaattaacctaaaaa 34565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 27163259 - 27163196
Alignment:
Q  72 aataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaa 135  Q
    |||||||||||| | | ||| ||||||||||||||||| |||| ||||||||| ||||||||||    
T  27163259 aataaatgatgtatgtggtttataatatagaccacatacatcatttattcaatgaacctaaaaa 27163196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 37491374 - 37491275
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtgatcaaa 164  Q
    |||||| |||||||||||| ||| ||   | |||||||| ||||| |||| ||||| ||| || ||||||| ||||| |||||||||||| |||| ||||    
T  37491374 ttcatttaataaatgatgtatatggtcacttatatagactacatacatcatttatttaataaatctaaaaagtaaatttttgcttataatagtgaccaaa 37491275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 43813226 - 43813132
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    |||||| |||||||||||| | | ||  ||| ||||||| |||||  ||| ||||| ||| || ||||||||||||| |||||||||||| ||||    
T  43813226 ttcattcaataaatgatgtatgtggtcaatattatagactacatacttcatttattgaatgaatctaaaaattaaatttttgcttataatagtga 43813132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 3967773 - 3967838
Alignment:
Q  94 taatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    |||||||| ||||||| |||| ||||||||| |||||||||| ||  | |||||||||||| ||||    
T  3967773 taatatagtccacatacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtga 3967838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 6250701 - 6250636
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacct 130  Q
    |||||| |||||||||||| |  |||  |||||||||||||||||||||| ||||| ||| |||||    
T  6250701 ttcatttaataaatgatgtatgcagtatataatatagaccacatatatcatttattgaataaacct 6250636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 44673965 - 44673898
Alignment:
Q  87 tagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataat 154  Q
    ||||| || ||||||||||||||||||| ||||| ||| |||||||||| ||||| |||| |||||||    
T  44673965 tagtttattatatagaccacatatatcatttattaaataaacctaaaaaataaatttttgtttataat 44673898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 6340640 - 6340698
Alignment:
Q  96 atatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataat 154  Q
    ||||| ||||||||||||| ||||| ||| |||||||||| | ||| ||||||||||||    
T  6340640 atataaaccacatatatcatttattgaatgaacctaaaaagttaatttttgcttataat 6340698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 29204487 - 29204537
Alignment:
Q  101 gaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataa 153  Q
    |||||||||||||| ||||||||| || ||||||||||||  |||||||||||    
T  29204487 gaccacatatatcatttattcaataaatctaaaaattaaa--tttgcttataa 29204537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 39682681 - 39682616
Alignment:
Q  94 taatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    |||||||||||||||| |||| ||||||||| |||||||||| ||| | ||| |||||||| ||||    
T  39682681 taatatagaccacatacatcatttattcaatgaacctaaaaaataattttttacttataatagtga 39682616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 8036591 - 8036543
Alignment:
Q  111 atcacttattcaattaacctaaaaattaaatgtttgcttataattgtga 159  Q
    |||| ||||||||| |||||||||| ||||| |||||||||||| ||||    
T  8036591 atcagttattcaatgaacctaaaaaataaatatttgcttataatagtga 8036543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 36447926 - 36447898
Alignment:
Q  107 atatatcacttattcaattaacctaaaaa 135  Q
    |||||||||||||||||||||||||||||    
T  36447926 atatatcacttattcaattaacctaaaaa 36447898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 14631042 - 14631117
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaa 140  Q
    |||||||||||||| || | | ||||  | |||||| |||||||| |||||||||||||| || ||||||||||||    
T  14631042 ttcattgaataaataatatatgtagtctagaatatataccacatacatcacttattcaataaatctaaaaattaaa 14631117  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 18942025 - 18942100
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaa 140  Q
    |||||| ||| |||||||| ||| ||| ||||||||||||||||| |||| | ||| ||| |||||||||| ||||    
T  18942025 ttcattcaattaatgatgtatatggttcataatatagaccacatacatcattaattgaatgaacctaaaaaataaa 18942100  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 30489135 - 30489184
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatca 114  Q
    |||||| ||| ||| |||| ||||||| ||||||||||||||||||||||    
T  30489135 ttcatttaattaattatgtatatagttcataatatagaccacatatatca 30489184  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 4162853 - 4162928
Alignment:
Q  76 aatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttata 152  Q
    |||||||| ||| ||| ||||||||||||||||| |||| | | | ||| |||||||||| ||||| ||||||||||    
T  4162853 aatgatgtatatggttcataatatagaccacatacatcattaaatgaatgaacctaaaaaataaat-tttgcttata 4162928  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 133176 - 133246
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaa 135  Q
    |||||| ||||||||||||  |||||  ||||||||||||||||| ||   ||||||||| ||||||||||    
T  133176 ttcattcaataaatgatgtacatagtctataatatagaccacatacattgtttattcaatgaacctaaaaa 133246  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 7158357 - 7158260
Alignment:
Q  65 ttcattgaataaatgatgtttatagttgataatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataattgtgatca 162  Q
    |||||| |||||||||||| ||| ||  | |||| |||||||||| |||| ||||| ||| || ||||||  || || |||||||||| |||||||||    
T  7158357 ttcattcaataaatgatgtatattgtctacaataaagaccacatacatcatttattgaataaatctaaaacatagatttttgcttatatttgtgatca 7158260  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 9246115 - 9246155
Alignment:
Q  95 aatatagaccacatatatcacttattcaattaacctaaaaa 135  Q
    ||||||||||||||| |||| ||||| ||||||||||||||    
T  9246115 aatatagaccacataaatcaattatttaattaacctaaaaa 9246155  T

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Target: scaffold0148 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 21189 - 21249
Alignment:
Q  94 taatatagaccacatatatcacttattcaattaacctaaaaattaaatgtttgcttataat 154  Q
    ||||||||||||||||||||| ||||| ||| || ||||||| | ||  ||||||||||||    
T  21189 taatatagaccacatatatcatttattaaatgaatctaaaaagtgaacatttgcttataat 21249  T

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