View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_41 (Length: 238)
Name: NF3310_low_41
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21868284 - 21868064
Alignment:
| Q |
1 |
ccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttgaagctcgtacgttttaagaatggatt |
100 |
Q |
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| T |
21868284 |
ccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttgaagctcgtacgttttaagaatggatt |
21868185 |
T |
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| Q |
101 |
gtacatcgatggagttttgcggccaagtcaatagtctaccatcaccatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaac |
200 |
Q |
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| T |
21868184 |
gtacaacgatggagttttgcggccaagtcaatagtctaccatcaccatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaac |
21868085 |
T |
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| Q |
201 |
ttttttcaccaatccattgct |
221 |
Q |
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||||||| ||||||||||||| |
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| T |
21868084 |
ttttttcgccaatccattgct |
21868064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21819151 - 21819203
Alignment:
| Q |
1 |
ccttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatctt |
53 |
Q |
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| T |
21819151 |
ccttcaatcttattcttcttatttgcaaaatagtccttcacatcaaagatctt |
21819203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 21819303 - 21819365
Alignment:
| Q |
144 |
accatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaactttttt |
206 |
Q |
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| T |
21819303 |
accatcatatacaatcaagcaagcttcaactccaaacttgttagaaaatttagaaactttttt |
21819365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 21876005 - 21875943
Alignment:
| Q |
144 |
accatcatacacaattaagcaagcttcaactccaaatttgctagaaaattcagaaactttttt |
206 |
Q |
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||||||||| ||||| |||||||||||||||||||| || ||||| || |||||||||||||| |
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| T |
21876005 |
accatcatatacaatcaagcaagcttcaactccaaactttctagacaaatcagaaactttttt |
21875943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 21876155 - 21876106
Alignment:
| Q |
3 |
ttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatct |
52 |
Q |
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| T |
21876155 |
ttcaatcttattcttcttattttcaaaatagtctttcacatcaaagatct |
21876106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 44260282 - 44260210
Alignment:
| Q |
3 |
ttcaaccttattcttcttatttgcaaaatagtccttcacatcaaagatcttcggagttgtctcaatcttttga |
75 |
Q |
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||||||||| | ||||||||| |||| |||||||| |||||||| ||||| |||||| |||||||||||||| |
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| T |
44260282 |
ttcaaccttttctttcttattttcaaagtagtccttgacatcaaatatcttaggagttttctcaatcttttga |
44260210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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