View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3310_low_43 (Length: 238)

Name: NF3310_low_43
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3310_low_43
NF3310_low_43
[»] chr5 (7 HSPs)
chr5 (7-61)||(7725545-7725599)
chr5 (3-61)||(8383977-8384035)
chr5 (3-61)||(38378226-38378283)
chr5 (3-61)||(38378791-38378848)
chr5 (4-57)||(33001039-33001092)
chr5 (3-62)||(40090813-40090871)
chr5 (15-61)||(9932240-9932286)
[»] chr4 (9 HSPs)
chr4 (3-61)||(48007258-48007316)
chr4 (3-62)||(8346271-8346330)
chr4 (6-61)||(39134524-39134579)
chr4 (3-61)||(13557454-13557512)
chr4 (3-61)||(46882668-46882726)
chr4 (3-61)||(55157633-55157691)
chr4 (3-61)||(46883046-46883103)
chr4 (31-61)||(24972264-24972294)
chr4 (32-61)||(8179905-8179934)
[»] chr7 (8 HSPs)
chr7 (6-61)||(4125487-4125542)
chr7 (3-61)||(10954408-10954466)
chr7 (3-61)||(1076310-1076368)
chr7 (3-61)||(9691077-9691135)
chr7 (17-61)||(24507844-24507888)
chr7 (22-61)||(13298783-13298822)
chr7 (13-61)||(10954585-10954633)
chr7 (17-61)||(21995275-21995319)
[»] chr6 (4 HSPs)
chr6 (3-61)||(17945265-17945323)
chr6 (3-61)||(15531144-15531202)
chr6 (3-47)||(10091364-10091408)
chr6 (28-61)||(6784511-6784544)
[»] chr1 (11 HSPs)
chr1 (3-61)||(52053831-52053889)
chr1 (1-46)||(11978510-11978555)
chr1 (7-56)||(33024780-33024830)
chr1 (26-61)||(18459738-18459773)
chr1 (3-61)||(33024679-33024737)
chr1 (31-61)||(10544164-10544194)
chr1 (31-61)||(13096983-13097013)
chr1 (31-61)||(17414749-17414779)
chr1 (31-61)||(17415350-17415380)
chr1 (31-61)||(18459581-18459611)
chr1 (31-61)||(49915882-49915912)
[»] scaffold0276 (1 HSPs)
scaffold0276 (7-61)||(2077-2131)
[»] scaffold0001 (1 HSPs)
scaffold0001 (3-54)||(149617-149668)
[»] chr8 (6 HSPs)
chr8 (3-53)||(10719596-10719646)
chr8 (3-62)||(23679598-23679659)
chr8 (8-58)||(27825208-27825258)
chr8 (25-61)||(8051921-8051957)
chr8 (31-62)||(35702446-35702477)
chr8 (3-37)||(7960806-7960840)
[»] chr2 (4 HSPs)
chr2 (3-47)||(3350825-3350869)
chr2 (7-56)||(18176752-18176802)
chr2 (12-61)||(32447909-32447958)
chr2 (3-61)||(18176845-18176903)
[»] chr3 (4 HSPs)
chr3 (3-61)||(931617-931675)
chr3 (23-61)||(34805768-34805806)
chr3 (28-61)||(22200613-22200646)
chr3 (28-61)||(22535509-22535542)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 7725599 - 7725545
Alignment:
Q  7 tatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7725599 tatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 7725545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 8384035 - 8383977
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  8384035 caattatctatagctaatatacaatatattaataatttatacaatgaatattttatatt 8383977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 38378283 - 38378226
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38378283 caattacctttaactaatata-aatatactaataatttatacaatgaatattttatatt 38378226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 38378848 - 38378791
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||    
T  38378848 caattatctctaactaatata-aatatactaataatctatacaatgaatactttatatt 38378791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 33001092 - 33001039
Alignment:
Q  4 aattatctctaactaatatacaatatactaataatttatacaatgaatatttta 57  Q
    |||||||||| ||||||||| |||||| |||||||||||||||| |||||||||    
T  33001092 aattatctcttactaatatataatatattaataatttatacaataaatatttta 33001039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 40090813 - 40090871
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatattt 62  Q
    ||||||||||||||||||||| || ||||  |||||||||| ||||||||||||||||||    
T  40090813 caattatctctaactaatatataacatacctataatttata-aatgaatattttatattt 40090871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 9932286 - 9932240
Alignment:
Q  15 actaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||| |||||||||| ||| |||||||||||||    
T  9932286 actaatatacaatatactgataatttatataataaatattttatatt 9932240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 48007258 - 48007316
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48007258 caattatctctaactaatatacaatatattaataatttatacaatgaatattttatatt 48007316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 8346330 - 8346271
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatattt 62  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8346330 caattatctctaactaatatatagtatactaataatttatacaatgaatattttatattt 8346271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 39134524 - 39134579
Alignment:
Q  6 ttatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  39134524 ttatctctaactaatatacaatgtactaataatttatataatgaatattttatatt 39134579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 13557512 - 13557454
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||    
T  13557512 caattatctcggaataatatacaatatactaataatttacacaatgaatattttatatt 13557454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 46882726 - 46882668
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  46882726 caattatctttaagtaatatacaatatactaataatttatacattaaatattttatatt 46882668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 55157691 - 55157633
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  55157691 caattatctattactaatatacaatatattaacaatttatacaatgaatattttatatt 55157633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 46883103 - 46883046
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||    
T  46883103 caattatctctaactaatatacaatatgctaat-atttatacattgaatatttaatatt 46883046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 24972264 - 24972294
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  24972264 ctaataatttatacaatgaatattttatatt 24972294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 8179905 - 8179934
Alignment:
Q  32 taataatttatacaatgaatattttatatt 61  Q
    ||||||||||||||||||||||||||||||    
T  8179905 taataatttatacaatgaatattttatatt 8179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 4125542 - 4125487
Alignment:
Q  6 ttatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4125542 ttatctctaactaatatacaatatattaataatttatacaatgaatattttatatt 4125487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 10954466 - 10954408
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  10954466 caattatctctaactaatatacaatatattaataaattatacaataaatattttatatt 10954408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 1076310 - 1076368
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||    
T  1076310 caattatctatgactaatatacaatatactaataatttatactataaatattttatatt 1076368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 9691135 - 9691077
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||    
T  9691135 caattatctcggaataatatacaatatactaataatttacacaatgaatattttatatt 9691077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 24507844 - 24507888
Alignment:
Q  17 taatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  24507844 taatatacaataaactaataatttatacaatgaatattttatatt 24507888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 13298822 - 13298783
Alignment:
Q  22 tacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13298822 tacaatatactaataatttatacaatgaatattttatatt 13298783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 10954585 - 10954633
Alignment:
Q  13 taactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||| |||||| |||  ||||||||||||||||||    
T  10954585 taactaatatacaatatattaataaattaatcaatgaatattttatatt 10954633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 21995275 - 21995319
Alignment:
Q  17 taatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||    
T  21995275 taatatacaatatactaataacttatataatgaatattgtatatt 21995319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 17945265 - 17945323
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17945265 caattatcactaactaatatacaatatacaaataatttatacaatgaatattttatatt 17945323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 15531202 - 15531144
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||    
T  15531202 caattatttctaaataatatacaatacactaataatttatacaatgaatgttttatatt 15531144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 10091364 - 10091408
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaat 47  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  10091364 caattatctctaattattatacaatatattaataatttatacaat 10091408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 6784511 - 6784544
Alignment:
Q  28 atactaataatttatacaatgaatattttatatt 61  Q
    |||| |||||||||||||||||||||||||||||    
T  6784511 atacaaataatttatacaatgaatattttatatt 6784544  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 52053831 - 52053889
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  52053831 caattatctctaaccaatatacaatatattaataatttatacaatgaatattttatatt 52053889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11978555 - 11978510
Alignment:
Q  1 cacaattatctctaactaatatacaatatactaataatttatacaa 46  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11978555 cacaattatctctaattaatatacaatatactaataatttatacaa 11978510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 33024780 - 33024830
Alignment:
Q  7 tatctctaactaatatacaatatactaa-taatttatacaatgaatatttt 56  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  33024780 tatctctaactaatatacaatatactaattaatttatacaatcaatatttt 33024830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 18459738 - 18459773
Alignment:
Q  26 atatactaataatttatacaatgaatattttatatt 61  Q
    |||| |||||||||||||||||||||||||||||||    
T  18459738 atattctaataatttatacaatgaatattttatatt 18459773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 33024737 - 33024679
Alignment:
Q  3 caattatctctaactaatatacaatatactaat-aatttatacaatgaatattttatatt 61  Q
    |||||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||||    
T  33024737 caattatctctaactg-tattcaatatattaattaatttatacaatgaatattttatatt 33024679  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 10544164 - 10544194
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  10544164 ctaataatttatacaatgaatattttatatt 10544194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 13097013 - 13096983
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  13097013 ctaataatttatacaatgaatattttatatt 13096983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 17414779 - 17414749
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  17414779 ctaataatttatacaatgaatattttatatt 17414749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 17415350 - 17415380
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  17415350 ctaataatttatacaatgaatattttatatt 17415380  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 18459581 - 18459611
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  18459581 ctaataatttatacaatgaatattttatatt 18459611  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 49915912 - 49915882
Alignment:
Q  31 ctaataatttatacaatgaatattttatatt 61  Q
    |||||||||||||||||||||||||||||||    
T  49915912 ctaataatttatacaatgaatattttatatt 49915882  T

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Target: scaffold0276 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2077 - 2131
Alignment:
Q  7 tatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2077 tatccctaactaatatacaatatattaataatttatacaatgaatattttatatt 2131  T

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Target: scaffold0001 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 149668 - 149617
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatatt 54  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  149668 caattatctctaactaatatataatatactaataatttattcaatgaatatt 149617  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 10719596 - 10719646
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatat 53  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  10719596 caattatctctaaataatatactatatactaataatttatacaatgaatat 10719646  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 23679659 - 23679598
Alignment:
Q  3 caattatctctaactaatata--caatatactaataatttatacaatgaatattttatattt 62  Q
    |||||||||||||||||||||  ||||||  |||||||||||||||||||||||||||||||    
T  23679659 caattatctctaactaatatatacaatatgttaataatttatacaatgaatattttatattt 23679598  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27825258 - 27825208
Alignment:
Q  8 atctctaactaatatacaatatactaataatttatacaatgaatattttat 58  Q
    ||||||||||||| || || |||||||| ||||||||||||||||||||||    
T  27825258 atctctaactaatgtaaaagatactaattatttatacaatgaatattttat 27825208  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 8051921 - 8051957
Alignment:
Q  25 aatatactaataatttatacaatgaatattttatatt 61  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8051921 aatatattaataatttatacaatgaatattttatatt 8051957  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 35702477 - 35702446
Alignment:
Q  31 ctaataatttatacaatgaatattttatattt 62  Q
    ||||||||||||||||||||||||||||||||    
T  35702477 ctaataatttatacaatgaatattttatattt 35702446  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 7960840 - 7960806
Alignment:
Q  3 caattatctctaactaatatacaatatactaataa 37  Q
    |||||||||||||||||||||||||||| ||||||    
T  7960840 caattatctctaactaatatacaatatattaataa 7960806  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 3350825 - 3350869
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaat 47  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  3350825 caattatctctaaataatatacaatatactaataatttatacaat 3350869  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 18176802 - 18176752
Alignment:
Q  7 tatctctaactaatatacaatatactaa-taatttatacaatgaatatttt 56  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  18176802 tatctctaactaatatacaatatactaattaatttatacaatcaatatttt 18176752  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 32447958 - 32447909
Alignment:
Q  12 ctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  32447958 ctaattaatatacaatatattaataatctatacaatgaatattttatatt 32447909  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 18176845 - 18176903
Alignment:
Q  3 caattatctctaactaatatacaatatactaat-aatttatacaatgaatattttatatt 61  Q
    |||||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||||    
T  18176845 caattatctctaactg-tattcaatatattaattaatttatacaatgaatattttatatt 18176903  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 931675 - 931617
Alignment:
Q  3 caattatctctaactaatatacaatatactaataatttatacaatgaatattttatatt 61  Q
    ||||||||||||| || |||| |||||| ||||||||||| ||||||||| ||||||||    
T  931675 caattatctctaaatagtatataatataataataatttatgcaatgaatactttatatt 931617  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 34805806 - 34805768
Alignment:
Q  23 acaatatactaataatttatacaatgaatattttatatt 61  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  34805806 acaatatattaataatttatacaatgagtattttatatt 34805768  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 22200646 - 22200613
Alignment:
Q  28 atactaataatttatacaatgaatattttatatt 61  Q
    |||||||| |||||||||||||||||||||||||    
T  22200646 atactaatgatttatacaatgaatattttatatt 22200613  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 22535509 - 22535542
Alignment:
Q  28 atactaataatttatacaatgaatattttatatt 61  Q
    |||||||| |||||||||||||||||||||||||    
T  22535509 atactaatgatttatacaatgaatattttatatt 22535542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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