View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3310_low_6 (Length: 455)

Name: NF3310_low_6
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3310_low_6
NF3310_low_6
[»] chr4 (5 HSPs)
chr4 (179-441)||(30717762-30718021)
chr4 (9-100)||(30718099-30718190)
chr4 (179-247)||(30894286-30894354)
chr4 (9-100)||(30894119-30894210)
chr4 (283-339)||(30894355-30894411)
[»] chr1 (1 HSPs)
chr1 (403-441)||(1619466-1619504)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 179 - 441
Target Start/End: Complemental strand, 30718021 - 30717762
Alignment:
Q  179 ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgcttctaaggtacgtacaatttctctatgattttcctttttatctatttatttatca 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30718021 ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgctcctaaggtacgtacaatttctctctgattttcctttttatctatttatttatca 30717922  T
Q  279 tatagatttttaaattcaactgttcaattgaattcggaagatctgtagtagtagtaatagttagttgaacgagtttttatttaatctaatggtgctgttg 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30717921 tatagatttttaaattcaactgttcaattgaattcggaagatctgtagt---agtaatagttagttgaacgagtttttatttaatctaatgttgctgttg 30717825  T
Q  379 ttgatatgcgaatattcaaagaagaagagattgtcgatgaataatttcgttttatgaaatttg 441  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717824 ttgatatgcgaattttcaaagaagaagagattgtcgatgaataatttcgttttatgaaatttg 30717762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 30718190 - 30718099
Alignment:
Q  9 agcagagaacgagaagatctgcctcgaagattatattcatcttcttcactctcaccacaccgttgatctcaccatgaatcaactcaatcagg 100  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30718190 agcaaagaacgagaagatctgcctcgaagattacattcatcttcttcactctcgccacaccgttgatctcaccatgaatcaactcaatcagg 30718099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 30894286 - 30894354
Alignment:
Q  179 ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgcttctaaggtacgtacaatttctct 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30894286 ttctcaggtcattcgtattcacggcttcaagaaaattcatcacgctcctaaggtacgtacaatttctct 30894354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 30894119 - 30894210
Alignment:
Q  9 agcagagaacgagaagatctgcctcgaagattatattcatcttcttcactctcaccacaccgttgatctcaccatgaatcaactcaatcagg 100  Q
    |||| ||||||| ||| |||||||||||||||| ||||||||||||||||||| | |||||  ||||||||| |||||||||||||||||||    
T  30894119 agcaaagaacgaaaagctctgcctcgaagattacattcatcttcttcactctcgcaacaccaatgatctcactatgaatcaactcaatcagg 30894210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 30894355 - 30894411
Alignment:
Q  283 gatttttaaattcaactgttcaattgaattcggaagatctgtagtagtagtaatagt 339  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||    
T  30894355 gatttttaaattcaactgtttaattgaattcagaatatctgtagtagtagtagtagt 30894411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 441
Target Start/End: Original strand, 1619466 - 1619504
Alignment:
Q  403 aagagattgtcgatgaataatttcgttttatgaaatttg 441  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  1619466 aagagattgttgatgaataatttagttttatgaaatttg 1619504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University