View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3310_low_7 (Length: 442)

Name: NF3310_low_7
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3310_low_7
NF3310_low_7
[»] chr1 (6 HSPs)
chr1 (1-426)||(46167677-46168102)
chr1 (298-404)||(8133643-8133751)
chr1 (22-64)||(46161283-46161325)
chr1 (1-34)||(46182984-46183017)
chr1 (321-349)||(2660564-2660592)
chr1 (38-99)||(46182929-46182992)
[»] chr4 (2 HSPs)
chr4 (280-404)||(32057395-32057520)
chr4 (306-406)||(26475104-26475204)
[»] chr8 (2 HSPs)
chr8 (328-406)||(15075033-15075113)
chr8 (328-399)||(15065736-15065809)
[»] chr7 (1 HSPs)
chr7 (295-405)||(28006861-28006973)
[»] chr3 (2 HSPs)
chr3 (341-406)||(35532759-35532827)
chr3 (295-406)||(12220932-12221043)
[»] chr5 (1 HSPs)
chr5 (137-189)||(38093770-38093822)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 46168102 - 46167677
Alignment:
Q  1 gtaaatatgagattgaggtccccacattttccatgatattttccataaataaataagaagtaaaagaaatctgaaatttcaaactagtttttatgaatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46168102 gtaaatatgagattgaggtccccacattttccatgatattttccataaataaataagaagtaaaagaaatctgaaatttcaaactagtttttatgaatac 46168003  T
Q  101 atgttatgtatcatgtacatgttgattgttactctcttttttaacagcaaaatttattaataacaaagaacctgcaaaagatgaacagggaccgatagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46168002 atgttatgtatcatgtacatgttgattgttactctcttttttaacagcaaaatttattaataacaaagtacctgcaaaagatgaacagggaccgatagaa 46167903  T
Q  201 actacatagcaatggtgccgtatacaggaggaacatctaaaagaaaatgcatgtacatcttaaacacgaatnnnnnnntaaaccttcaaattctaatcaa 300  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||    
T  46167902 actacatagcaatggtgccgtatataggaggaacatccaaaagaaaatgcatgtacatcttaaacacgaataaaaaaataaacctccaaattctaatcaa 46167803  T
Q  301 cacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccaaaaacaaaattcaaacac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  46167802 cacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccacaaacaaaaatcaaacac 46167703  T
Q  401 ctatcgactacttttcacaccaaggt 426  Q
    ||||||||||||| ||||||||||||    
T  46167702 ctatcgactacttctcacaccaaggt 46167677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 404
Target Start/End: Complemental strand, 8133751 - 8133643
Alignment:
Q  298 caacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttac-actccatcgtaaatgac--caaaaacaaaattc 394  Q
    ||||||| |||||||| ||| | |||||||| |||||||||||||||||||||  |||||||| || ||| |||| | |||| |  ||||||||||||||    
T  8133751 caacaccaaaaccaagttaagcccccacaaa-ccaacataaaccaaaagttgagccaaaacctcacaacttcatcatgaatggccacaaaaacaaaattc 8133653  T
Q  395 aaacacctat 404  Q
    ||||||||||    
T  8133652 aaacacctat 8133643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 46161325 - 46161283
Alignment:
Q  22 ccacattttccatgatattttccataaataaataagaagtaaa 64  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  46161325 ccacattttcaatgatagtttccataaataaataagaagtaaa 46161283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46183017 - 46182984
Alignment:
Q  1 gtaaatatgagattgaggtccccacattttccat 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  46183017 gtaaagatgagattgaggtccccacattttccat 46182984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 349
Target Start/End: Original strand, 2660564 - 2660592
Alignment:
Q  321 cccacaaaaccaacataaaccaaaagttg 349  Q
    |||||||||||||||||||||||||||||    
T  2660564 cccacaaaaccaacataaaccaaaagttg 2660592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 46182992 - 46182929
Alignment:
Q  38 attttccataaataaataagaagtaaa--agaaatctgaaatttcaaactagtttttatgaata 99  Q
    ||||||||||||||||||| |||||||  | ||||| || ||||||||| | ||||||||||||    
T  46182992 attttccataaataaataacaagtaaattaaaaatccgagatttcaaacgaatttttatgaata 46182929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 32057520 - 32057395
Alignment:
Q  280 aaaccttcaaattctaatcaacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatga 379  Q
    |||||| |||| || |||||||||| |||| ||| ||||| || ||||| | |||||||||||||||||||  |||||||| |||||||||||| |||||    
T  32057520 aaacctccaaaatcaaatcaacaccaaaactaagttaaaccccaacaaa-caaacataaaccaaaagttgaggcaaaacctcacactccatcgtgaatga 32057422  T
Q  380 c--caaaaacaaaattcaaacacctat 404  Q
    |  | |||| |||||||||||| ||||    
T  32057421 caacgaaaataaaattcaaacaactat 32057395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 406
Target Start/End: Complemental strand, 26475204 - 26475104
Alignment:
Q  306 aaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgacc--aaaaacaaaattcaaacaccta 403  Q
    |||||||| ||||| || |||||   ||||||||||||||||||| |||||  || |||||||||||| |||| ||  | || |||||| ||||||||||    
T  26475204 aaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaa--ctcacactccatcgtgaatggccatagaatcaaaatccaaacaccta 26475107  T
Q  404 tcg 406  Q
    |||    
T  26475106 tcg 26475104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 406
Target Start/End: Original strand, 15075033 - 15075113
Alignment:
Q  328 aaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgac--caaaaacaaaattcaaacacctatcg 406  Q
    ||||||||||||||||||||| |  ||||||||||||||| ||||||||| ||  || |||||||||||||||| ||||||    
T  15075033 aaccaacataaaccaaaagttcagccaaaaccttacactctatcgtaaataaccacataaacaaaattcaaacagctatcg 15075113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 15065736 - 15065809
Alignment:
Q  328 aaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgaccaaa--aacaaaattcaaaca 399  Q
    |||||||||||||||||||||||  ||||||||||||||| ||| ||||| |||| |  |||||||||||||||    
T  15065736 aaccaacataaaccaaaagttgagccaaaaccttacactctatcttaaataaccacattaacaaaattcaaaca 15065809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 405
Target Start/End: Complemental strand, 28006973 - 28006861
Alignment:
Q  295 aatcaacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgac--caaaaacaaaat 392  Q
    |||||||||  |||||||| ||||| || |   ||||||||||||||||||  |||  |||||||||||||||| || | |||| |  || |||||||||    
T  28006973 aatcaacacgaaaaccaagttaaactcctatgcaaccaacataaaccaaaatgtgagccaaaaccttacactccctcatgaatggccacataaacaaaat 28006874  T
Q  393 tcaaacacctatc 405  Q
    |||||||||||||    
T  28006873 tcaaacacctatc 28006861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 35532759 - 35532827
Alignment:
Q  341 caaaagttgattcaaaaccttacac-tccatcgtaaatgac--caaaaacaaaattcaaacacctatcg 406  Q
    |||||||||| ||||||||| |||| |||||||||||||||  |||||| |||||||||||| ||||||    
T  35532759 caaaagttgagtcaaaacctcacacctccatcgtaaatgactacaaaaataaaattcaaacaactatcg 35532827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 12221043 - 12220932
Alignment:
Q  295 aatcaacacctaaaccaagataaacacccacaaaaccaacataaaccaaaagttgattcaaaaccttacactccatcgtaaatgac--caaaaacaaaat 392  Q
    |||||||||| |||||||| ||||| || |||||   ||||||||||||||||||| ||  || || ||| |||||| | ||||||  ||||||||||||    
T  12221043 aatcaacaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtc--aagctcacaatccatcttgaatgaccacaaaaacaaaat 12220946  T
Q  393 tcaaacacctatcg 406  Q
     ||||||| |||||    
T  12220945 ccaaacacatatcg 12220932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 38093822 - 38093770
Alignment:
Q  137 ttttttaacagcaaaatttattaataacaaagaacctgcaaaagatgaacagg 189  Q
    ||||||||| |||||||||||||||||  |||  |||||| ||||||||||||    
T  38093822 ttttttaacggcaaaatttattaataatcaagtccctgcataagatgaacagg 38093770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University