View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3310_low_9 (Length: 383)
Name: NF3310_low_9
Description: NF3310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3310_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 49545338 - 49544963
Alignment:
| Q |
1 |
attcatgatatataatctaataaatttctcttttcaaatgaattaaaaacacatacaagtcaacatttacattattcatgaatatatgactatatcagat |
100 |
Q |
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| T |
49545338 |
attcatgatatataatctaataaatttctcttttcaaatgaattaaaaacacacacaagtcaacagttacattattcatgaatatataactatatcagat |
49545239 |
T |
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| Q |
101 |
cttagattagaatttagatcatgcctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatga |
200 |
Q |
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| T |
49545238 |
cttagattagaatttagatcatgcctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatga |
49545139 |
T |
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| Q |
201 |
catcaactccacatctgaataatccatgaccctgtcaactctgtcttgcaactcctgcataaagaaaattacgaaacatacaacatatgtcaaggccgga |
300 |
Q |
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| T |
49545138 |
catcaactccaaatctgaataatccatgaccctgtcaactctgtcttgcaactcctgcataaagaaaattacgaaacatacaacatatgtcaaggctgga |
49545039 |
T |
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| Q |
301 |
ccaatacatattgaggcatacgacggatttaaaaataaggctacctatgtttatgttaccttccatttgatgatgt |
376 |
Q |
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| T |
49545038 |
ccaatacatattgaggcatacgacggatttaaaaataaggctacctatgtttatgttaccttccatttgatgatgt |
49544963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 2469838 - 2469923
Alignment:
| Q |
124 |
cctgtgtagttaagtgcactatagttctccaacaaaaccatctccccatggaagtcaactatttccctccataatgacatcaactc |
209 |
Q |
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| T |
2469838 |
cctgtgtagttaagtgcactatagttctctaacaaaaccatctctccatgaaaatccactatttccctccctactgtcatcaactc |
2469923 |
T |
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