View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_high_12 (Length: 229)
Name: NF3311_high_12
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 23385480 - 23385652
Alignment:
| Q |
2 |
cttgaggaggagcacagacatttaagaagagagttaaggatgctttattttcatcactcactctaacattgatcttgaggaggagcactcacatttaaga |
101 |
Q |
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| T |
23385480 |
cttgaggagtaacactcacatttaagaagagagttaaggatgctttattttcatcactcactctaacattgatcttgaggaggagcactcacatttaaga |
23385579 |
T |
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| Q |
102 |
atagagttaattatactttattttcaataaactttctagcactcacatttggatgatctccttcactattatg |
174 |
Q |
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| T |
23385580 |
atagagttaagtatgctttattttcaatactctttctagcactcacatttggatgatctccttcactattatg |
23385652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23385552 - 23385605
Alignment:
| Q |
1 |
tcttgaggaggagcacagacatttaagaagagagttaaggatgctttattttca |
54 |
Q |
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|||||||||||||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
23385552 |
tcttgaggaggagcactcacatttaagaatagagttaagtatgctttattttca |
23385605 |
T |
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