View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_high_2 (Length: 409)
Name: NF3311_high_2
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 6534310 - 6533934
Alignment:
| Q |
15 |
gacggtataagggaagggataatttgaatgtttattcttacaaaaataaaatccaaactaatcatttacattttgatatgaaagatgagtaagtctcttt |
114 |
Q |
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| T |
6534310 |
gacggtataagggaagggataatttgaatgtttattcttacaaaaataaaatccatagtaataatttacattttgatatgaaagatgaataagtctcttt |
6534211 |
T |
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| Q |
115 |
ggtacaataaaaattgactgatatgaaaattgtgac-gagtcaaaatgaagtttcactctttttatgtattcattatcatagcatactttaatttgtaat |
213 |
Q |
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| T |
6534210 |
gctacaataaaaattga-tcatatgaaaattgtgaccgagtcaa--tggattttcactctttttatgtattcattatcgtagcatactttaatttgtaat |
6534114 |
T |
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| Q |
214 |
ttttagtaaaaaatttacatcgatagcaatggcaataatgatacattttcaatcaaatcatgtcatatata--ttgnnnnnnnagtagccggaatttaaa |
311 |
Q |
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| T |
6534113 |
ttttagtaaaaaatttacatcgatagcgatggcaataatgatacattttcaatcaaatcatgtcatatatactttgtttttttagtagccgaaatttaaa |
6534014 |
T |
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| Q |
312 |
cctcggatcatggtaaacaagtatgatctctacttcacttgattataagaaactattttgatagctcagtaagttagtta |
391 |
Q |
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| T |
6534013 |
cctcggatcatggtaaacaagtatgatctctacttcacttgattataagaaactattttgatagctcagtaagttagtta |
6533934 |
T |
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