View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3311_high_5 (Length: 349)
Name: NF3311_high_5
Description: NF3311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3311_high_5 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2592766 - 2593087
Alignment:
| Q |
1 |
atgatgtagttgttgtggtaat----aggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatt |
96 |
Q |
| |
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|||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||| ||||||| |
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| T |
2592766 |
atgatgtagttgttgtagtaattaataggcgaaattgaaaagaaaactgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatt |
2592865 |
T |
|
| Q |
97 |
tctacaatcatcaaaattgtaggcttttctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatccttttttcaact |
196 |
Q |
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|||| |||||||||||||||||| || |||||||||| |||||||||||| |||| ||||||| ||||||||||||| ||||||||||| |||| | ||| |
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| T |
2592866 |
tctataatcatcaaaattgtaggtttgtctaacataacacaattcctatgataataactatatggttatattgtaatttagttaaatcc-ttttgctact |
2592964 |
T |
|
| Q |
197 |
aagtataatttttgctctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacactta |
296 |
Q |
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| ||||| | |||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2592965 |
atgtatattctttggtctatctatctctatatc------tatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacactta |
2593058 |
T |
|
| Q |
297 |
ttgaagtagtcttgttcaacctcttattt |
325 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
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|
| T |
2593059 |
ttgaagtagtcttgtttaacctcttattt |
2593087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 2624311 - 2624619
Alignment:
| Q |
24 |
ggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttt |
123 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |
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| T |
2624311 |
ggtgaaattgaaaagaaaattgagaagaagttcagagaaattggtttcaccttagcttccaaaaaat--catttctacaatcatcaaaattgtaggtttt |
2624408 |
T |
|
| Q |
124 |
tctaacataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatctc |
223 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||| ||||| | |||| |
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| T |
2624409 |
tctaacataacacaatttatatgctaattactatatgtttatattgtaatatagttaaatccttttctctactatgtataatctttattctatatttctc |
2624508 |
T |
|
| Q |
224 |
t-----atatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacct |
318 |
Q |
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| ||||||||||||||||||||||||||||| ||| |||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2624509 |
tatatcatatcatatcatatatgaataaaaccatgactcccacctaaaaaaaaagtggagttaaggagatgacacttattgaagtagtcttgttcaacct |
2624608 |
T |
|
| Q |
319 |
cttatttgaaa |
329 |
Q |
| |
|
||||||||||| |
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| T |
2624609 |
cttatttgaaa |
2624619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 143 - 333
Target Start/End: Original strand, 2634879 - 2635069
Alignment:
| Q |
143 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatctctatatcatatcatatatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2634879 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatttctatatcatatcatatatga |
2634978 |
T |
|
| Q |
243 |
ataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatttgaaagttg |
333 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2634979 |
ataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttg |
2635069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2568502 - 2568334
Alignment:
| Q |
1 |
atgatgtagttgttgtggtaataggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttcta |
100 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||| || |
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| T |
2568502 |
atgatgtacttgttgtgataacaggtgaaattgaaaataaaattgag--gaggtttacggaaattggttgtcccttagcttctaaaaaatttcatttgta |
2568405 |
T |
|
| Q |
101 |
caatcatcaaaattgtaggcttttctaacataagacaattcctatgctaattactatatcgttatattgta |
171 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||| ||||| ||||| |
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| T |
2568404 |
caatcatcaaaattgttggtttttcaaacataagacaattcctatgttaattactatatagttattttgta |
2568334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 2624631 - 2624722
Alignment:
| Q |
42 |
attgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttttctaacataa |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
2624631 |
attgagaagaggttcagggaaattggtttcaccttagcttcctaaaaatttcatttctacaattatgaaaattgtaggcttttctaacataa |
2624722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 2671846 - 2671688
Alignment:
| Q |
29 |
aattgaaaagaaaattgagaagaggttcagggaaattggtttcacctt-agcttcttaaaaatttcatttctacaatcatcaaaattgtaggcttttcta |
127 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| |||| || | |||| |||||| ||| |||||| | |||||||||||||||||| || ||||| | |
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| T |
2671846 |
aattgaaaagaaaattgagaagaggtttaaggagattgtttgctcctttagcttccaaaagttttcatctgtacaatcatcaaaattgttggtttttcaa |
2671747 |
T |
|
| Q |
128 |
acataagacaattcctatgctaattactatatcgttatattgtaatatagttaaatcctttttt |
191 |
Q |
| |
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||||| |||||||||||| ||||||| ||| |||||||||||||||| ||| |||||| |
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|
| T |
2671746 |
acatagcacaattcctatgttaattac-----ggttctattgtaatatagttacatcttttttt |
2671688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 2596043 - 2595962
Alignment:
| Q |
16 |
tggtaataggtgaaattgaaaagaaaattgagaagaggttcagggaaattggtttcaccttagcttcttaaaaatttcattt |
97 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| ||| ||||| | || | |||||||| ||||||||||||| |
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|
| T |
2596043 |
tggtaataggtaaaattgaaaagaaaaatgagaagaggtttaggaaaattagatttcctttagcttccgaaaaatttcattt |
2595962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 2568324 - 2568258
Alignment:
| Q |
230 |
atatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacactta |
296 |
Q |
| |
|
||||||||||||| ||||| | |||||| ||||| || ||||| |||||||||||||||||||||| |
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|
| T |
2568324 |
atatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
2568258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 2671633 - 2671592
Alignment:
| Q |
260 |
acctagaaaataagcggagttagggagatgacacttattgaa |
301 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
2671633 |
accttgaaaataaggggagttagggagatgacacttattgaa |
2671592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2440821 - 2440872
Alignment:
| Q |
1 |
atgatgtagttgttgtggtaataggtgaaattgaaaagaaaattgagaagagg |
53 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||||| |||||||||| |
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|
| T |
2440821 |
atgatggagttgttgtggtaatatgtgaaatt-aaaagaaaaatgagaagagg |
2440872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 143 - 333
Target Start/End: Complemental strand, 5130 - 4940
Alignment:
| Q |
143 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatctctatatcatatcatatatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5130 |
tatgctaattactatatcgttatattgtaatatagttaaatccttttttcaactaagtataatttttgctctatctatttctatatcatatcatatatga |
5031 |
T |
|
| Q |
243 |
ataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatttgaaagttg |
333 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5030 |
ataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctattatttgaaagttg |
4940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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